PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s749921g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 468aa    MW: 52283.1 Da    PI: 7.2956
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s749921g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.7e-14203253155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+++GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  PDK_30s749921g002 203 SRFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDKAAIKCNG 253
                        789*******.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.993112168IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-7134169IPR016177DNA-binding domain
SMARTSM003801.6E-4134174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-9138168IPR001471AP2/ERF domain
CDDcd000183.76E-26203263No hitNo description
PfamPF008477.5E-10203253IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-17203263IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-16204261IPR001471AP2/ERF domain
PROSITE profilePS5103216.12204261IPR001471AP2/ERF domain
SMARTSM003801.8E-32204267IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MERKLLVKVG ASCSTAPPSP CEGQVIMLVK RKMLNPNPYP SLGDTKFGKA AAFGHQSTSP  60
AAFLAQSPVV GFGFEKKVGR EERDCGKQVY LGMYDVKNLY ESMEIFVFIV DDYGSVYERI  120
CPSTFLQMLM FSMKLTSIGG FDTAHAAARA YDRAAIKFRG MDADINFSLD DYEEDLKQMS  180
NLTKEEFVQV LRRQSTGFPR GSSRFRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEEEA  240
ARAYDKAAIK CNGKDAVTNF DPSIYENELD LPTSHTEHNL DLCLGSSGTK RNDLEPMDDE  300
ATNGMDQRFP MALDPQWNRS TRLKFDGKLK LHEEKESRIN HPRSNAYIQS PVPFHTNEMF  360
EHPQLQRNGD AFPMFQIIPQ QFNPSGFRRH AGSNDGARIV GGGLPLAAGC EQQEKHSFWE  420
NGGNNWPSAS TLPSQMFAMT ASAASSGFPP QIAKLPSSWQ QKNGFGLS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795894.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AVJ96e-88APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A2H3YAV00.0A0A2H3YAV0_PHODC; AP2-like ethylene-responsive transcription factor TOE3 isoform X1
STRINGXP_008795894.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-77AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]