PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s751561g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 253aa    MW: 27388.4 Da    PI: 7.7152
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s751561g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.83.2e-3166158188
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                        f+kv tpsdv+k++rlv+pk++ae++    ++ + +++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + g  
  PDK_30s751561g002  66 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldMSANGKGMLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGGGg 157
                        89***************************96667899*************************************************976544 PP

                        S CS
                 B3  88 s 88 
                        s
  PDK_30s751561g002 158 S 158
                        4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.5E-4260158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-3063156IPR015300DNA-binding pseudobarrel domain
CDDcd100179.89E-2564149No hitNo description
PROSITE profilePS5086313.63466170IPR003340B3 DNA binding domain
PfamPF023621.0E-2766156IPR003340B3 DNA binding domain
SMARTSM010194.0E-1966162IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDFTHGRRDR FYGEDDDSKH PPLVPSSSSS SSPSSSSTVL RWSGGASGSG GGSSSDAPYV  60
EKEHMFDKVV TPSDVGKLNR LVIPKQHAEK YFPLDMSANG KGMLLSFEDR TGKPWRFRYS  120
YWNSSQSYVM TKGWSRFVKE KRLDAGDTVS FGRGGGGSSG DEVVAGVPMV LDSVPLVHSQ  180
ATAKRVRLFG VDLDCPEPDG SAVDDNGLRL SMRRMQPRST APVPQWSQGG AESSMASSPS  240
PGKEKQSPLD LDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-54611613103B3 domain-containing transcription factor NGA1
5os9_B8e-54611613103B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8332961e-85CT833296.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA019E02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017697228.17e-87B3 domain-containing protein Os02g0683500-like
TrEMBLA0A2H3ZM482e-85A0A2H3ZM48_PHODC; B3 domain-containing protein Os02g0683500-like
STRINGORUFI04G24570.14e-71(Oryza rufipogon)
STRINGGSMUA_Achr4P30170_0014e-71(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-48B3 family protein