PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s752531g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 139aa    MW: 15580.5 Da    PI: 6.1384
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s752531g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00033961123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y C++Cg + s ks+ ++Hi +H
  PDK_30s752531g001 39 YYCEYCGICRSKKSLIRSHILSH 61
                       89*******************96 PP
2zf-C2H220.21.6e-0686108123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+ sF+ + +Lk+H+++H
  PDK_30s752531g001  86 HTCQECSASFRKPAHLKQHMQSH 108
                        79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.45E-837108No hitNo description
SMARTSM00355203961IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-785110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00586108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.46886113IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDSAMASVEP TALVGGTANE AADGFSEREK PIFRDIRRYY CEYCGICRSK KSLIRSHILS  60
HHKDELKDAQ TDQGNEENEL NNQLPHTCQE CSASFRKPAH LKQHMQSHSL EVAASPAVDL  120
IPYITFFCLN FAAAFTETT
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793643.12e-72transcription factor IIIA-like
SwissprotQ84MZ45e-23TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2H3Y5C44e-71A0A2H3Y5C4_PHODC; transcription factor IIIA-like
STRINGXP_008793643.16e-72(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17974810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.23e-24transcription factor IIIA