PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s752531g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 297aa    MW: 34664.6 Da    PI: 8.9189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s752531g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.3e-062246123
                       EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                       ++Cp  dC+ s++rk++L+rH+  H
  PDK_30s752531g002 22 FSCPldDCHLSYRRKDHLTRHLLQH 46
                       89*******************9887 PP
2zf-C2H214.20.000135176123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                       ++Cp  +C+++F  k n++rH +  H
  PDK_30s752531g002 51 FTCPveNCNRRFAIKANMNRHVKEfH 76
                       89********************9988 PP
3zf-C2H220.41.4e-0688112123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y C+   Cgk+F+  s L++H  tH
  PDK_30s752531g002  88 YICQepGCGKTFKYASKLRKHEDTH 112
                        889999***************9998 PP
4zf-C2H219.72.3e-06179203223
                        EET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                        kC+   C ++Fs++snL++Hi+  H
  PDK_30s752531g002 179 KCSfkGCQYTFSNRSNLNQHIKAvH 203
                        688999***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.26E-61748No hitNo description
Gene3DG3DSA:3.30.160.609.6E-82048IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012246IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3282251IPR007087Zinc finger, C2H2
PROSITE patternPS0002802446IPR007087Zinc finger, C2H2
SuperFamilySSF576671.56E-64977No hitNo description
Gene3DG3DSA:3.30.160.604.0E-64977IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00865176IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8685176IPR007087Zinc finger, C2H2
PROSITE patternPS0002805376IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-1183113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.42E-783113No hitNo description
SMARTSM003558.7E-488112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.34488113IPR007087Zinc finger, C2H2
PROSITE patternPS00028090112IPR007087Zinc finger, C2H2
SMARTSM003552.7120145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280122145IPR007087Zinc finger, C2H2
SMARTSM003558.6148169IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.23E-9159216No hitNo description
Gene3DG3DSA:3.30.160.602.8E-8159200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.946178208IPR007087Zinc finger, C2H2
SMARTSM003554.5E-5178203IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280180203IPR007087Zinc finger, C2H2
SMARTSM003558.7209235IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280211235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGGPPVKLHQ ESLNHAFPMR PFSCPLDDCH LSYRRKDHLT RHLLQHQGKL FTCPVENCNR  60
RFAIKANMNR HVKEFHEDGC LCEGEKQYIC QEPGCGKTFK YASKLRKHED THAKLDYVEV  120
VCCEPGCMKT FTNTECLKDH IQSCHQYVQC EVCGTQQLKK NLKRHQRMHD GGGVTERIKC  180
SFKGCQYTFS NRSNLNQHIK AVHQELRPFA CRIPGCRNRF PYRHVRDNHE KSGVHVYVQG  240
DFLETDEHLR SRPRGGRKRK CLSVETLQRK RVVPPGQVSS LDDGTYYMRW LLSDDQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-142020541190PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-142020541190PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251259RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793643.10.0transcription factor IIIA-like
SwissprotQ84MZ41e-80TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2H3Y5C40.0A0A2H3Y5C4_PHODC; transcription factor IIIA-like
STRINGXP_008793643.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.18e-84transcription factor IIIA