PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s755201g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 429aa MW: 46265.4 Da PI: 8.8681

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s755201g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PDK_30s755201g001 52 FVCEICSKGFQRDQNLQLHRRGH 74 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.26E-6	51	74	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.0E-5	51	74	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.036	52	74	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.887	52	74	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	54	74	IPR007087	Zinc finger, C2H2
SMART	SM00355	310	93	123	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	4.26E-6	123	148	No hit	No description
SMART	SM00355	170	128	148	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MSMEGVSSNQ QSSFAIPNPN PVKKKRSLPG NPDPDAEVIA LSPKSLMATN RFVCEICSKG 60 FQRDQNLQLH RRGHNLPWKL KQRSSKEVRK KVYICPEVAC VHHDPSRALG DLTGIKKHFC 120 RKHGEKKWKC DKCSKKYAVQ SDCKAHTKIC GTREYRCDCG TLFSRRDSFI THRAFCDALA 180 EESERAIAAN TVADDHPPLC SQAAASHDPS TLPNASVQQA QFPHLPSTLP NFSVQQAQFP 240 HLMRTTEASA STGSSQGLQE LSLKGEHQEQ DYFSMRPGIP PWIACQGPGP PLDLSASIYS 300 TRLGPEFQNE NQPPNPPVYP TSAATPHLSA TALLQKAAQM GASMSRPPNS GQMAAHTISA 360 AGFGLGLSSH QEMWGGGDGG GGHVLKDMMM ASMSSAPGLG GGSFGGALGG ILGLKREGNG 420 LPINRERHI

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MSMEGVSSNQ QSSFAIPNPN PVKKKRSLPG NPDPDAEVIA LSPKSLMATN RFVCEICSKG  60
FQRDQNLQLH RRGHNLPWKL KQRSSKEVRK KVYICPEVAC VHHDPSRALG DLTGIKKHFC  120
RKHGEKKWKC DKCSKKYAVQ SDCKAHTKIC GTREYRCDCG TLFSRRDSFI THRAFCDALA  180
EESERAIAAN TVADDHPPLC SQAAASHDPS TLPNASVQQA QFPHLPSTLP NFSVQQAQFP  240
HLMRTTEASA STGSSQGLQE LSLKGEHQEQ DYFSMRPGIP PWIACQGPGP PLDLSASIYS  300
TRLGPEFQNE NQPPNPPVYP TSAATPHLSA TALLQKAAQM GASMSRPPNS GQMAAHTISA  360
AGFGLGLSSH QEMWGGGDGG GGHVLKDMMM ASMSSAPGLG GGSFGGALGG ILGLKREGNG  420
LPINRERHI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-32	124	185	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-32	124	185	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	90	KLKQRSSKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008807175.1	0.0	protein indeterminate-domain 2-like isoform X1
Swissprot	Q9SCQ6	1e-113	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A2H3Z1V3	0.0	A0A2H3Z1V3_PHODC; protein indeterminate-domain 2-like isoform X1
STRING	XP_008807175.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-103	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]