PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s759111g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 142aa    MW: 16707.9 Da    PI: 9.0411
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s759111g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.9e-10691042055
                        HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +k +yps++++  LA+++gL+++q+ +WF N+R ++
  PDK_30s759111g001  69 YKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRH 104
                        4579*****************************985 PP
2ELK408e-142445122
                ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                       ELK qLlrKYsgyLg+LkqEF+
  PDK_30s759111g001 24 ELKGQLLRKYSGYLGGLKQEFL 45
                       9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011883.9E-72445IPR005539ELK domain
PfamPF037892.3E-102445IPR005539ELK domain
PROSITE profilePS5121310.8772444IPR005539ELK domain
PROSITE profilePS5007112.90844107IPR001356Homeobox domain
SuperFamilySSF466892.48E-2046121IPR009057Homeodomain-like
SMARTSM003893.4E-1346111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-2949109IPR009057Homeodomain-like
CDDcd000865.85E-1256108No hitNo description
PfamPF059201.7E-1764103IPR008422Homeobox KN domain
PROSITE patternPS00027082105IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
RNGSSEEEFD ACENYVDPQA EDRELKGQLL RKYSGYLGGL KQEFLKKRKK GKLPKEARQQ  60
LLDWWNRHYK WPYPSESQKL ALAQSTGLDQ KQINNWFINQ RKRHWKPSEE MQLVVMDTAH  120
PHYFTDSSLG NPFPLDCAPA LL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13948LKQEFLKKRK
24549KKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8904201e-164DQ890420.1 Elaeis guineensis class I KNOX-like 1 protein (KNOX1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787080.11e-103homeobox protein knotted-1-like 4
SwissprotO222991e-74LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLA0A2H3XQ321e-101A0A2H3XQ32_PHODC; homeobox protein knotted-1-like 4
STRINGXP_008787080.11e-102(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2107357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.12e-69KNOX/ELK homeobox transcription factor