PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s759601g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 199aa    MW: 22542.3 Da    PI: 10.1216
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s759601g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-18123177256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ ++t+eq   Lee F ++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  PDK_30s759601g003 123 RKKLRLTREQSALLEERFTEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 177
                        788899***********************************************98 PP
2HD-ZIP_I/II107.88e-35123196174
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 
                        +kk+rl++eq++lLEe F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr+y++l+
  PDK_30s759601g003 123 RKKLRLTREQSALLEERFTEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEILKRRYKTLT 196
                        69********************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.362119179IPR001356Homeobox domain
SMARTSM003898.8E-15121183IPR001356Homeobox domain
SuperFamilySSF466894.71E-18121188IPR009057Homeodomain-like
PfamPF000467.4E-16123177IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-17123177IPR009057Homeodomain-like
CDDcd000861.16E-13123180No hitNo description
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSQDEMCDTG LALGLGIGGR SSSSSNLHRR REPYSTFSIS TPYKPSLTLG LSNDVYGATA  60
MPKAESHKTN EESRPARPSS PHSTLSTAYP PSVKREKDAG SEEAEVVRVF SRASDEEEDA  120
SARKKLRLTR EQSALLEERF TEHSTLNPKQ KQALAKQLNL RPRQVEVWFQ NRRARTKLKQ  180
TEVDCEILKR RYKTLTDFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171179RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939328.11e-108homeobox-leucine zipper protein HAT9
SwissprotP466031e-47HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLA0A2H3XXM34e-88A0A2H3XXM3_PHODC; homeobox-leucine zipper protein HAT9-like
STRINGXP_008785763.11e-124(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.13e-45HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]