PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s762461g016
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 159aa    MW: 17457.5 Da    PI: 5.7024
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s762461g016genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-171563255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +ykGVr++k +g+Wv+eIr+p   g + r +lg++ t+e Aa a++ a   l+g
  PDK_30s762461g016 15 KYKGVRRRK-WGKWVSEIRVP---G-SHRLWLGSYATPEAAAVAHDTAVFFLRG 63
                       8*****998.**********8...3.6**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-241474IPR001471AP2/ERF domain
PfamPF008473.6E-101563IPR001471AP2/ERF domain
CDDcd000181.81E-211574No hitNo description
SMARTSM003802.5E-231579IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-171574IPR016177DNA-binding domain
PROSITE profilePS5103221.1671573IPR001471AP2/ERF domain
PRINTSPR003673.8E-81627IPR001471AP2/ERF domain
PRINTSPR003673.8E-83753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSRTQEGAAT AGERKYKGVR RRKWGKWVSE IRVPGSHRLW LGSYATPEAA AVAHDTAVFF  60
LRGPDWSQGL NFPDRVATYP WTGLSPTSIQ RVASDSGMAV DAQLAVRVPQ AQMQPPAQRA  120
EVGAMEDVNG REGGEHGYLY EGSELGGDIC NEDMDIIYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807007.11e-113ethylene-responsive transcription factor ERF020-like
SwissprotO805427e-31ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLA0A2H3Z1I01e-112A0A2H3Z1I0_PHODC; ethylene-responsive transcription factor ERF020-like
STRINGXP_008807007.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.12e-33ERF family protein
Publications ? help Back to Top
  1. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]