PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s763151g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 168aa MW: 18232.4 Da PI: 8.9694

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s763151g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.4	4e-06	3	31	22	55
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55 +L +l+P++ K +Ka++L +++eY+k+Lq PDK_30s763151g002 3 TLHKLVPNS-----SKSDKASMLDEVIEYLKQLQ 31 688888886.....7******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.28	1	30	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-9	1	40	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.20E-7	1	34	No hit	No description
SuperFamily	SSF47459	1.23E-9	2	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PRINTS	PR00049	6.2E-7	67	83	IPR017987	Wilm's tumour protein
PRINTS	PR00049	6.2E-7	119	133	IPR017987	Wilm's tumour protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MKTLHKLVPN SSKSDKASML DEVIEYLKQL QAQVRMMSRM RTMMMPMTML QLQMSMMAQM 60 AQMGMGMGMG MMDLNSLIHP SAFLPLSTAH WDGSGDKMQQ PGGTNLAEPF SAFLASQTAQ 120 PPPPPPPPPP PPPAAAAAAA AVGMDLYNWM AALYQQFNQQ PPSGNPKP

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026664048.1	2e-76	transcription factor UNE10-like
Swissprot	Q8GZ38	3e-17	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A3Q0IAJ7	4e-75	A0A3Q0IAJ7_PHODC; transcription factor UNE10-like
STRING	XP_008802832.1	4e-49	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7474	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-15	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]