PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s764381g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 194aa    MW: 22389.7 Da    PI: 5.7512
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s764381g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT eEd++l+++++ +G g W+  ar  g++Rt+k+c++rw++yl
  PDK_30s764381g004 15 KGPWTMEEDLILINYIANHGEGVWNNLARSAGLNRTGKSCRLRWLNYL 62
                       79********************************************97 PP
2Myb_DNA-binding53.65e-1768111146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T+eE++l+ d+++++G++ W++Ia+ ++ gRt++++k++w++
  PDK_30s764381g004  68 RGNITPEEQLLIMDLHARWGNR-WSKIAKQLP-GRTDNEIKNYWRT 111
                        7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-23865IPR009057Homeodomain-like
PROSITE profilePS5129415.3181062IPR017930Myb domain
SuperFamilySSF466892.81E-3013109IPR009057Homeodomain-like
SMARTSM007174.2E-131464IPR001005SANT/Myb domain
PfamPF002493.2E-161562IPR001005SANT/Myb domain
CDDcd001673.61E-101762No hitNo description
PROSITE profilePS5129425.25463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2466118IPR009057Homeodomain-like
SMARTSM007176.0E-1467115IPR001005SANT/Myb domain
PfamPF002492.0E-1568111IPR001005SANT/Myb domain
CDDcd001678.63E-1172111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDKSINSSQE TEVRKGPWTM EEDLILINYI ANHGEGVWNN LARSAGLNRT GKSCRLRWLN  60
YLRPDVRRGN ITPEEQLLIM DLHARWGNRW SKIAKQLPGR TDNEIKNYWR TRIQKKVKQG  120
ESFDYQQAMV TDETSTSNST SQTNSVEDVG LQPSYAQTQV TNPDALPPHF SSTESSDNFW  180
SVEDFWSMQQ FNGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812482.11e-144myb-related protein 305-like
SwissprotP813912e-87MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A2H3ZEY01e-143A0A2H3ZEY0_PHODC; myb-related protein 305-like
STRINGXP_008812482.11e-144(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.13e-75myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]