PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s764621g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

M-type_MADS

Protein Properties

Length: 181aa MW: 19447.6 Da PI: 9.6162

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s764621g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.2	3.7e-17	19	62	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i n + fskRr+gi+KKA EL vLC++++avi +s+ gk PDK_30s764621g003 19 PIRNRDALYACFSKRRKGIFKKAGELAVLCGIQAAVITLSPGGK 62 56777777889******************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.189	10	70	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-20	10	69	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.42E-23	11	83	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-10	12	32	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.7E-18	20	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-10	32	47	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-10	47	68	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MEIARKRCGK GRRKIAMEPI RNRDALYACF SKRRKGIFKK AGELAVLCGI QAAVITLSPG 60 GKPMSFGHPS ADAVIDRYLG APLGQDLAAS DEPPSCLDRK PGVPPGGQFW WVDSIHLLDL 120 GDLETIHTSM ETIQRAILRK ANVLASARAA LAGVLAGIQP LAMMNGSDRD PDLYVPSWGG 180 N

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_008796509.1	1e-126	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1224	36	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	4e-23	AGAMOUS-like 62