PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s764641g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 192aa    MW: 21311.1 Da    PI: 8.9155
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s764641g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.62.1e-133359127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ykte+Cr + + G+C+yG++C++aHg+
  PDK_30s764641g001 33 YKTEICRSWDELGFCRYGSKCQYAHGK 59
                       9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.8E-182863IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-103163IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-83259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.693260IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-103359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MYKTPVKVEV EEDVLVMDGV LVTDSESARP SLYKTEICRS WDELGFCRYG SKCQYAHGKE  60
ELRGTRSTRP KSEVGGQSGK SVPIAGSYAY RNRFRYHPSA FSSSASATTR AIAAPAAKAT  120
IMRAEVGSTA VAAPTVSPRR SLSEPSFIWP PTQEEEAYIN QVLYGPSQRR RLPVFCEICP  180
QYRSWAVAQF DP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811573.11e-110zinc finger CCCH domain-containing protein 9-like
RefseqXP_008811574.11e-110zinc finger CCCH domain-containing protein 9-like
TrEMBLA0A2H3ZC221e-109A0A2H3ZC22_PHODC; zinc finger CCCH domain-containing protein 9-like
STRINGXP_008811573.11e-109(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2944533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.16e-10C3H family protein