PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s765571g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 330aa    MW: 36712.3 Da    PI: 6.2683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s765571g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-192978255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  PDK_30s765571g001 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 78
                       69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.14E-312888No hitNo description
PfamPF008473.2E-132978IPR001471AP2/ERF domain
PROSITE profilePS5103222.7482986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-302987IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-212987IPR016177DNA-binding domain
SMARTSM003802.6E-362992IPR001471AP2/ERF domain
PRINTSPR003672.8E-103041IPR001471AP2/ERF domain
PRINTSPR003672.8E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDNLRKSPLK PWKKGPTRGN GGPQNATCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAMAYD EAARRLYGPD AYLNLPHLCS NINSTITGKP PHRFKWFPSK NFTSMIPSYG  120
LLNLSAQHNV HVIHQKLQEF KNSRSSSSSS SCRSLFQSLE QPPPAAPVEE TLLENSNMRV  180
EEASVMPEKP QIDLKEFLQQ LGVLKEEESK PEADEGAESS VMAVPTQESS GVASEMVGFD  240
EADFNWDTLV EMQAWADHSV IEDGGLSETS MILDATRAVS EPQIFLANPR DDNAEISRTF  300
VACRRALSTT ALGCAPLSSK IQALLSSQRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-173086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934576.21e-151dehydration-responsive element-binding protein 2F
SwissprotQ9SVX51e-73DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A2H3Z8041e-143A0A2H3Z804_PHODC; dehydration-responsive element-binding protein 2F
STRINGXP_008809802.11e-144(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.18e-64ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]