PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s765911g009
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 893aa    MW: 100708 Da    PI: 8.1437
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s765911g009genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.4e-2485186199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   +
  PDK_30s765911g009  85 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELIAKDLHGVEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--R 173
                        99****************************963.3445679************************************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         +++el+++++r+
  PDK_30s765911g009 174 GNDGELRLGIRRA 186
                        489999****996 PP
2Auxin_resp93.92.5e-313113751882
         Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                        ras+seF+v+++k+ k++++++++GmRfkm++e+ed++err +G+++g+ dldpvrWp+SkWr+L
  PDK_30s765911g009 311 RASPSEFIVPYWKFAKSFSHPFAIGMRFKMRYESEDAAERRHTGLITGIGDLDPVRWPGSKWRCL 375
                        89**************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-4377198IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-4079193IPR015300DNA-binding pseudobarrel domain
CDDcd100176.34E-2283185No hitNo description
PROSITE profilePS5086313.28185187IPR003340B3 DNA binding domain
SMARTSM010192.2E-2385187IPR003340B3 DNA binding domain
PfamPF023622.3E-2285186IPR003340B3 DNA binding domain
PfamPF065073.9E-26311375IPR010525Auxin response factor
SuperFamilySSF542778.34E-11732815No hitNo description
PROSITE profilePS5174519.807739826IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    Send to blast
MPSERNVRGL GEELFGLCEA MISSGRLRST CRSLADAATD EVYAQLSLVA ESEEVERQLR  60
EGEVEGDGEV EDVDGLHRSS MPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYKQQR  120
PSQELIAKDL HGVEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRGNDGELR  180
LGIRRAAQLK NGTPFSAPWS QSLDLGKQAA VANVVSTKSV FHIYYNPRWL VIRDSKIYDL  240
TLGSKQNLII LFSFMTKLFA CFFSILKQAI CAPVYMELPT MELSDMFWIR KGHKEYDQFL  300
RKGITLLLCM RASPSEFIVP YWKFAKSFSH PFAIGMRFKM RYESEDAAER RHTGLITGIG  360
DLDPVRWPGS KWRCLLNWEQ VWEQMLGSGY FRNIFSKEVF KKRVRWDDDV DTGRQNRVSP  420
WEIEPTNSIS GHNSLLAPGS KRTKVSLPTV DPDFAVPNGN GCPDLGEFAR FHRVLQGQEF  480
MGFKTPYDGI DVTISQETEA RNHQYFDTRR STTNANSRMS GGPRSGVRVP VGNSDFPYKC  540
IGFSESSRFQ RVLQGQELVP ENPPYHGGIV NIHSRNGQFG SIDAAHLSGA GNRCPAPSQG  600
CTLLQSLGLS VQASSPSSVL MFQQASFKPP CSQSVFDMNQ RRKDDGVLSR KETSLHCWPR  660
YVGGEVINEH HKAGRVHASK PELKNDKKIS SSVCKLFGFP LTERIPLTNE VDRTERNSET  720
NFPTSKPQRP AKRLRRSCTT MLQVHKQGSV VVRVVDLSKL DGYDELICEL EQLFDMKGLL  780
NDPHRKWNVV YTDDEDDMML VGDDPWQLSV SSCLSIICTI IHLLYCCCGQ TLKQAFSFLC  840
REFCKIASKI LICTNYEEMM ACGEEAHGYS DGPSFPFDVT RFSLGSSKSS VST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-583543084359Auxin response factor 1
4ldw_A2e-583543084359Auxin response factor 1
4ldw_B2e-583543084359Auxin response factor 1
4ldx_A3e-583543084359Auxin response factor 1
4ldx_B3e-583543084359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798266.10.0auxin response factor 15-like isoform X1
SwissprotQ0JKI97e-98ARFB_ORYSJ; Auxin response factor 2
TrEMBLA0A2H3YGF20.0A0A2H3YGF2_PHODC; Auxin response factor
STRINGXP_008798266.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-83ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]