PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s768851g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 259aa    MW: 29759.9 Da    PI: 4.6672
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s768851g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-184092456
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       ++++  +q+e Le+ F+ ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  PDK_30s768851g001 40 KRRLMVDQVELLEKNFALDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 92
                       4567789*********************************************9 PP
2HD-ZIP_I/II125.91.8e-4039128291
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        kkrrl  +qv+lLE++F  ++kLeperK +la++Lglqprqva+WFqnrRAR+ktkq+Ekdy aLk++yd lk++ e+L ke+e+L++e+
  PDK_30s768851g001  39 KKRRLMVDQVELLEKNFALDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQMEKDYGALKSSYDVLKADFEKLLKEKEKLKAEV 128
                        9**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0001802133IPR018247EF-Hand 1, calcium-binding site
SuperFamilySSF466892.69E-182696IPR009057Homeodomain-like
PROSITE profilePS5007116.7953494IPR001356Homeobox domain
SMARTSM003892.1E-163898IPR001356Homeobox domain
CDDcd000862.10E-163995No hitNo description
PfamPF000465.6E-164092IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-1944101IPR009057Homeodomain-like
PRINTSPR000319.5E-66574IPR000047Helix-turn-helix motif
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PRINTSPR000319.5E-67490IPR000047Helix-turn-helix motif
PfamPF021833.0E-1594134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MMNIENVRGI TNEGSFYRSL DLDETGEVNL EEFCRQPDKK RRLMVDQVEL LEKNFALDNK  60
LEPERKIQLA KDLGLQPRQV AIWFQNRRAR WKTKQMEKDY GALKSSYDVL KADFEKLLKE  120
KEKLKAEVLF LTDNLCKGEK GDLETHEIKN PPLLLEKLDM ASVFEEKKPD MHVLLCKPED  180
LSSANSTVSD SDSPGCTDGV LSPLMGQAGS SNVFKPDRAV LLHVDEDEEI KGCSSMKLED  240
NSCNYVFPVE DQAFWFWPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18694RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808495.10.0homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBLA0A2H3Z4V00.0A0A2H3Z4V0_PHODC; homeobox-leucine zipper protein HAT5-like isoform X1
STRINGXP_008808495.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16055714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-34homeobox protein 16