PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s770491g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 97aa    MW: 11016.6 Da    PI: 9.8535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s770491g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.22.8e-0811631454
                       HHHHHHHHHHHCTSCCC...............TTS-STCHHHHHHHHHHHHHH CS
                HLH 14 driNsafeeLrellPkas............kapskKlsKaeiLekAveYIksL 54
                       ++iN+ +++L++llP++              +++   s +  L++++ YIksL
  PDK_30s770491g001 11 EEINELISKLQTLLPESRrrnigrvkkpppPEQKAQASASKLLKETCSYIKSL 63
                       47**************666*********88777788****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.597163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-71187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-51163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-81182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MSSSRRRITD EEINELISKL QTLLPESRRR NIGRVKKPPP PEQKAQASAS KLLKETCSYI  60
KSLHQEVDDL SDRLSDLIAT MDSNSPQAEI IRSLLRS
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917019.11e-45transcription factor ILI5
SwissprotA2X9L81e-34ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX01e-34ILI5_ORYSJ; Transcription factor ILI5
TrEMBLM0SZD52e-40M0SZD5_MUSAM; Uncharacterized protein
STRINGXP_008803188.17e-49(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.15e-24bHLH family protein