PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s771211g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 507aa    MW: 56388 Da    PI: 6.1345
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s771211g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.77.3e-1401375071374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++ L++cA+av+++d   +++l ++l++++s +g+p+qR+ ay++e+L arla+++s++ykal+++e +   sse l+++++++ev+P++k
  PDK_30s771211g001 137 LKQMLIACARAVAENDIPVVEWLTSELRQMVSVSGEPIQRVGAYMLEGLVARLASTGSSIYKALRCKEPT---SSELLSYMHVLYEVCPYFK 225
                        5799*****************************************************************9...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        f+++ aN aI ea++ge++vHiiDf+i qG QW++L+qaLa+Rp+gpp++RiTg++++ s   +   l+ +g+rL+++A++++vpfef++ +
  PDK_30s771211g001 226 FGYMSANGAIAEALKGENMVHIIDFQIAQGSQWVTLIQALAARPGGPPHVRITGIDDSVSAyaRGGGLHIVGQRLSRLAQSCNVPFEFHA-A 316
                        *********************************************************888899999************************.8 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a + +d+ele+L v+pgEalaVn+++qlh+++desvs++++rd++L++vkslsPkvv +veqe+++n+++F+ rfle+l+yy+a+f+sl+++
  PDK_30s771211g001 317 AISGSDVELEHLGVQPGEALAVNFAFQLHHMPDESVSTRNHRDRLLRMVKSLSPKVVALVEQESNTNTAPFFPRFLETLDYYTAIFESLDVT 408
                        999***************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        l+re++eri+vE+++l+r+ivnv+acegaer+erhe ++kWr+r+++aGFkp pls  +++++k+ll+++  + yr+ee++g l+lgWk+r+
  PDK_30s771211g001 409 LARENKERISVEQHCLARDIVNVIACEGAERVERHELFGKWRSRFTMAGFKPCPLSPLVNATIKTLLENYC-EHYRLEERDGVLYLGWKNRA 499
                        **********************************************************************9.55****************** PP

               GRAS 367 LvsvSaWr 374
                        Lv+ +aWr
  PDK_30s771211g001 500 LVVSCAWR 507
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098571.073111488IPR005202Transcription factor GRAS
PfamPF035142.5E-137137507IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MARQLLQQHE IVTYHDESNK WNVHPHTSGQ FCTLESSSAA AGYATHNSPS SLAFSPNSGS  60
PLSQQECQSD NTYGSPLSVS CITEDPNDLK LKLRELETAM LGPDSDIVES FESTYPSHTS  120
LDPEKWRQVM GIPRGDLKQM LIACARAVAE NDIPVVEWLT SELRQMVSVS GEPIQRVGAY  180
MLEGLVARLA STGSSIYKAL RCKEPTSSEL LSYMHVLYEV CPYFKFGYMS ANGAIAEALK  240
GENMVHIIDF QIAQGSQWVT LIQALAARPG GPPHVRITGI DDSVSAYARG GGLHIVGQRL  300
SRLAQSCNVP FEFHAAAISG SDVELEHLGV QPGEALAVNF AFQLHHMPDE SVSTRNHRDR  360
LLRMVKSLSP KVVALVEQES NTNTAPFFPR FLETLDYYTA IFESLDVTLA RENKERISVE  420
QHCLARDIVN VIACEGAERV ERHELFGKWR SRFTMAGFKP CPLSPLVNAT IKTLLENYCE  480
HYRLEERDGV LYLGWKNRAL VVSCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6414450626378Protein SCARECROW
5b3h_A8e-6414450625377Protein SCARECROW
5b3h_D8e-6414450625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800637.20.0LOW QUALITY PROTEIN: chitin-inducible gibberellin-responsive protein 2-like
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A2H3YLP10.0A0A2H3YLP1_PHODC; LOW QUALITY PROTEIN: chitin-inducible gibberellin-responsive protein 2-like
STRINGXP_008800637.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]