PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s771211g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GRAS

Protein Properties

Length: 286aa MW: 31731.2 Da PI: 6.2847

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s771211g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365.7	6.2e-112	3	286	32	317
GRAS 32 spdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGl 123 + +g+p+qR+ ay++e+L arla+++s++ykal+++e + sse l+++++++ev+P++kf+++ aN aI ea++ge++vHiiDf+i qG PDK_30s771211g002 3 TISGEPIQRVGAYMLEGLVARLASTGSSIYKALRCKEPT---SSELLSYMHVLYEVCPYFKFGYMSANGAIAEALKGENMVHIIDFQIAQGS 91 5689********************************9...9********************************************* PP GRAS 124 QWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213 QW++L+qaLa+Rp+gpp++RiTg++++ s + l+ +g+rL+++A++++vpfef++ +a + +d+ele+L v+pgEalaVn+++qlh++ PDK_30s771211g002 92 QWVTLIQALAARPGGPPHVRITGIDDSVSAyaRGGGLHIVGQRLSRLAQSCNVPFEFHA-AAISGSDVELEHLGVQPGEALAVNFAFQLHHM 182 **********************888899999********************.8999************************ PP GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305 +desvs++++rd++L++vkslsPkvv +veqe+++n+++F+ rfle+l+yy+a+f+sl+++l+re++eri+vE+++l+r+ivnv+acegaer PDK_30s771211g002 183 PDESVSTRNHRDRLLRMVKSLSPKVVALVEQESNTNTAPFFPRFLETLDYYTAIFESLDVTLARENKERISVEQHCLARDIVNVIACEGAER 274 **************************************************************************************** PP GRAS 306 rerhetlekWre 317 +erhe ++kWre PDK_30s771211g002 275 VERHELFGKWRE 286 ********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.321	1	286	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-109	3	286	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
METISGEPIQ RVGAYMLEGL VARLASTGSS IYKALRCKEP TSSELLSYMH VLYEVCPYFK 60 FGYMSANGAI AEALKGENMV HIIDFQIAQG SQWVTLIQAL AARPGGPPHV RITGIDDSVS 120 AYARGGGLHI VGQRLSRLAQ SCNVPFEFHA AAISGSDVEL EHLGVQPGEA LAVNFAFQLH 180 HMPDESVSTR NHRDRLLRMV KSLSPKVVAL VEQESNTNTA PFFPRFLETL DYYTAIFESL 240 DVTLARENKE RISVEQHCLA RDIVNVIACE GAERVERHEL FGKWRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-53	1	286	48	322	Protein SCARECROW
5b3h_A	8e-53	1	286	47	321	Protein SCARECROW
5b3h_D	8e-53	1	286	47	321	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008800637.2	0.0	LOW QUALITY PROTEIN: chitin-inducible gibberellin-responsive protein 2-like
Swissprot	Q9LDL7	1e-168	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A2H3YLP1	0.0	A0A2H3YLP1_PHODC; LOW QUALITY PROTEIN: chitin-inducible gibberellin-responsive protein 2-like
STRING	XP_008800637.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1513	37	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-170	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]