PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s771701g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Dof

Protein Properties

Length: 454aa MW: 49163.9 Da PI: 5.8553

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s771701g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.8	6.7e-40	66	126	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s+ PDK_30s771701g002 66 PDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHST 126 78999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	52	123	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-32	67	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	70	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MEVNDPMPDA LEELNQDDPN GSGLNIGSED DNQAPNQDME VATDSKAEHD KTETDSSGQE 60 KVLKKPDKVL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR 120 KNKHSTSQYR HIMMSSDGLA SGRIDASDLI PHQALPCGPS VPMRSMKGNG TVLKFGPEVP 180 LCESMASVLN LGEQKKNAGL GSIACGENRE EPSCASSVTA SNCVENGLPE NVAHMEQNGT 240 QGYCNGLTPM PHLQCYPGAP WAYPWGPGWN NIAAMAAGRC SSEVVYGPEN GSPSLIPWSP 300 PPMMSALAFC APTIPFPFMP PSFWGCMSSW PNGAWNAPWV GSNGSTSPSS STRNNGCLGN 360 GSPTLGKHSR DANLQGEEKM EKYLWVPKTL RIDDPDEAAK SSIWATLGIK PEEGGIFKPF 420 QSKAESKRRT SDDAQILHAN PAALSRSQSF QENT

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MEVNDPMPDA LEELNQDDPN GSGLNIGSED DNQAPNQDME VATDSKAEHD KTETDSSGQE  60
KVLKKPDKVL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR  120
KNKHSTSQYR HIMMSSDGLA SGRIDASDLI PHQALPCGPS VPMRSMKGNG TVLKFGPEVP  180
LCESMASVLN LGEQKKNAGL GSIACGENRE EPSCASSVTA SNCVENGLPE NVAHMEQNGT  240
QGYCNGLTPM PHLQCYPGAP WAYPWGPGWN NIAAMAAGRC SSEVVYGPEN GSPSLIPWSP  300
PPMMSALAFC APTIPFPFMP PSFWGCMSSW PNGAWNAPWV GSNGSTSPSS STRNNGCLGN  360
GSPTLGKHSR DANLQGEEKM EKYLWVPKTL RIDDPDEAAK SSIWATLGIK PEEGGIFKPF  420
QSKAESKRRT SDDAQILHAN PAALSRSQSF QENT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008793337.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A2H3Y4L3	0.0	A0A2H3Y4L3_PHODC; cyclic dof factor 3-like
STRING	XP_008793337.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-72	cycling DOF factor 2