PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s772531g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GRAS

Protein Properties

Length: 430aa MW: 47643.5 Da PI: 6.8605

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s772531g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	397.5	1.4e-121	34	429	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilk 92 ++lL++cAe ++ gdl a+++ + ls asp+gd+ Rl++ f++AL+ rl + s+l++ ps+++ ++sse+l++ l +++v+P+l+ PDK_30s772531g003 34 RQLLISCAERIHCGDLPTARRTASLLSAAASPYGDSADRLTHQFARALSLRLDS-PSRLAS---PSPSAASSSSEALQSSYLsLNQVTPFLR 121 79*************************************************9.444443...3333334455555554445***** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl. 181 f+hltaNqaIlea++g++r+Hi+Dfd s+G+QWp+Llqa+a+R+ +gpps+RiTg g + l++tg+rL+ fA++lg++f+f++l PDK_30s772531g003 122 FAHLTANQAILEALDGCRRIHILDFDTSHGVQWPPLLQAIAERSnaDGPPSIRITGTGT----DLSVLRRTGDRLQTFAHSLGLQFQFHPLl 209 ****************************************8889*******....9************************ PP GRAS 182 ......................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqea 246 +++++++l+ ++++++pgE+laVn+vl lh+ll+++ s ++ e +++L++vk l+P v+v+e+ea PDK_30s772531g003 210 lpisstnssspssststsilstTTTTTTNLTSSSFQLHPGETLAVNCVLFLHKLLQDQDSRSEddgsrELRAFLQAVKALNPAAVTVAEREA 301 ******9999999988766668888899999****************88777766677777899**************** PP GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 +hns+ Fl+rf+eal+yy+++f+slea+lp++s+er vE+++lgrei+++va eg+ rrerhe++++W+ +++aGF+++pls +a +qak PDK_30s772531g003 302 SHNSPIFLQRFMEALDYYTVVFESLEATLPPKSQERLAVEQVWLGREIEDIVAWEGEGRRERHERFARWEGLMRDAGFSNLPLSPFALSQAK 393 **************************************************************************************** PP GRAS 339 lllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 lllr ++ s+gy+++ +++++lgW++++L+svS+W PDK_30s772531g003 394 LLLRLHYpSEGYQLQMVRDCIFLGWQNKALFSVSSW 429 ********************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.13	7	409	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.7E-119	34	429	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010014	Biological Process	meristem initiation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MEDPDPHNHH HQQRSNPHQP NPPHGLISLS AHARQLLISC AERIHCGDLP TARRTASLLS 60 AAASPYGDSA DRLTHQFARA LSLRLDSPSR LASPSPSAAS SSSEALQSSY LSLNQVTPFL 120 RFAHLTANQA ILEALDGCRR IHILDFDTSH GVQWPPLLQA IAERSNADGP PSIRITGTGT 180 DLSVLRRTGD RLQTFAHSLG LQFQFHPLLL PISSTNSSSP SSSTSTSILS TTTTTTTNLT 240 SSSFQLHPGE TLAVNCVLFL HKLLQDQDSR SEDDGSRELR AFLQAVKALN PAAVTVAERE 300 ASHNSPIFLQ RFMEALDYYT VVFESLEATL PPKSQERLAV EQVWLGREIE DIVAWEGEGR 360 RERHERFARW EGLMRDAGFS NLPLSPFALS QAKLLLRLHY PSEGYQLQMV RDCIFLGWQN 420 KALFSVSSWH

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MEDPDPHNHH HQQRSNPHQP NPPHGLISLS AHARQLLISC AERIHCGDLP TARRTASLLS  60
AAASPYGDSA DRLTHQFARA LSLRLDSPSR LASPSPSAAS SSSEALQSSY LSLNQVTPFL  120
RFAHLTANQA ILEALDGCRR IHILDFDTSH GVQWPPLLQA IAERSNADGP PSIRITGTGT  180
DLSVLRRTGD RLQTFAHSLG LQFQFHPLLL PISSTNSSSP SSSTSTSILS TTTTTTTNLT  240
SSSFQLHPGE TLAVNCVLFL HKLLQDQDSR SEDDGSRELR AFLQAVKALN PAAVTVAERE  300
ASHNSPIFLQ RFMEALDYYT VVFESLEATL PPKSQERLAV EQVWLGREIE DIVAWEGEGR  360
RERHERFARW EGLMRDAGFS NLPLSPFALS QAKLLLRLHY PSEGYQLQMV RDCIFLGWQN  420
KALFSVSSWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-62	30	430	1	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008783096.2	0.0	protein MONOCULM 1-like
Swissprot	Q9ZWC5	1e-114	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A2H3XFQ2	0.0	A0A2H3XFQ2_PHODC; protein MONOCULM 1-like
STRING	XP_008783096.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-91	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]