PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s772911g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 61aa    MW: 6918.14 Da    PI: 10.7449
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s772911g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF104.83e-33958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  PDK_30s772911g001  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                       79**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.655161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-31259IPR002100Transcription factor, MADS-box
CDDcd002657.74E-39259No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-34323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-281057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-342338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-343859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV  60
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-22161161MEF2C
5f28_B5e-22161161MEF2C
5f28_C5e-22161161MEF2C
5f28_D5e-22161161MEF2C
6byy_A5e-22161161MEF2 CHIMERA
6byy_B5e-22161161MEF2 CHIMERA
6byy_C5e-22161161MEF2 CHIMERA
6byy_D5e-22161161MEF2 CHIMERA
6bz1_A5e-22161161MEF2 CHIMERA
6bz1_B5e-22161161MEF2 CHIMERA
6bz1_C5e-22161161MEF2 CHIMERA
6bz1_D5e-22161161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7397013e-73AY739701.1 Elaeis guineensis MADS box transcription factor (AGL6-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783531.11e-35MADS-box transcription factor 6-like
SwissprotP293861e-35AGL6_ARATH; Agamous-like MADS-box protein AGL6
TrEMBLC6T9C58e-35C6T9C5_SOYBN; Uncharacterized protein
STRINGXP_008783531.14e-35(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.16e-38AGAMOUS-like 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Dreni L,Zhang D
    Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes.
    J. Exp. Bot., 2016. 67(6): p. 1625-38
    [PMID:26956504]