PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s773851g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 132aa    MW: 15000.3 Da    PI: 10.3373
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s773851g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.8e-1088124336
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS- CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRt 36 
                        rW+  E+e l +av+++G+g+Wk I ++ +   + Rt
  PDK_30s773851g002  88 RWSLLEEETLRKAVEKHGKGNWKMILSCHPdifEERT 124
                        9************************998776665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-879125IPR009057Homeodomain-like
SuperFamilySSF466898.22E-983126IPR009057Homeodomain-like
CDDcd116601.19E-987127No hitNo description
PfamPF002499.3E-788122IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MALLLDMKSG ATLGQSRLAM ASKGRGRHGR DSLMRNFGKW DDSSVESASG MAPTLLKDLC  60
LHSPKRRMVS PLTLIENNKL SKRRKIKRWS LLEEETLRKA VEKHGKGNWK MILSCHPDIF  120
EERTETDESY DG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16484KRRMVSPLTLIENNKLSKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811928.11e-54uncharacterized protein LOC103722954 isoform X1
RefseqXP_008811929.11e-54uncharacterized protein LOC103722954 isoform X1
RefseqXP_026655714.18e-55uncharacterized protein LOC103722954 isoform X2
TrEMBLA0A2H3ZCW13e-53A0A2H3ZCW1_PHODC; uncharacterized protein LOC103722954 isoform X1
TrEMBLA0A3Q0HMK72e-53A0A3Q0HMK7_PHODC; uncharacterized protein LOC103722954 isoform X2
STRINGXP_008811928.15e-54(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-06MYB_related family protein