PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s774131g007
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 376aa    MW: 42609.6 Da    PI: 8.5308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s774131g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00059167191123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        +kC    C k+F++  +L  H rtH
  PDK_30s774131g007 167 FKCMhgGCEKTFKNAQTLSMHCRTH 191
                        789999******************9 PP
2zf-C2H2140.00015215233220
                        EETTTTEEESSHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                        +Cp Cg+ F   ++L+rH 
  PDK_30s774131g007 215 RCPVCGRIFVGLYELRRHF 233
                        8*****************6 PP
3zf-C2H2110.0013244266123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C++Cgk F    +L+ H +++
  PDK_30s774131g007 244 HNCKKCGKKFYIEVDLRDHEKLC 266
                        67*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-6163192No hitNo description
Gene3DG3DSA:3.30.160.603.9E-7164193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0051167191IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492167196IPR007087Zinc finger, C2H2
PROSITE patternPS000280169191IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-7213264No hitNo description
SMARTSM003550.077214237IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280214237IPR007087Zinc finger, C2H2
PROSITE profilePS501578.58214242IPR007087Zinc finger, C2H2
SMARTSM0035548244264IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621244265IPR007087Zinc finger, C2H2
SMARTSM00355260270291IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDSSSPLPLP GSPFPLNPAD FPNFPPLPLS EELKYLCADL TLPPDFYNVG SPSAMDPQVS  60
SDFGFPVSKD AVFPFDPAVS VEDLEFIDAQ LEFRVHDNVV QGDIFPQNPN VGYVEAGESY  120
LTPPNTAQNA EFKDLAKSQK INGLREGKKA LKVATVSVDM IRNRRPFKCM HGGCEKTFKN  180
AQTLSMHCRT HDKNMSDVLA TSAVKAGQNK KIPCRCPVCG RIFVGLYELR RHFGRKHSEG  240
EKMHNCKKCG KKFYIEVDLR DHEKLCGEMV GCKCGLKFAF KCNLQAHKRT HPECVGKPSN  300
SPEHRNVEKD QTENIRDRRL SYRQHDADAM KHAYRISASF KRIMENLTLR NVAEAFVHFK  360
QYDRISQQYI NSRLHD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931586.10.0zinc finger protein ENHYDROUS
TrEMBLA0A1U8B6S17e-97A0A1U8B6S1_NELNU; zinc finger protein 567-like
STRINGXP_010271936.11e-97(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5085222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.12e-11C2H2-like zinc finger protein