PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s774131g011
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 248aa    MW: 27546.3 Da    PI: 8.0381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s774131g011genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-0954112354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC..........TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkas.......kapskKlsKaeiLekAveYIksL 54 
                        r+h e+E+rRR+ri+s +++Lr++l  ++          + + +Ka+ L kAve +++L
  PDK_30s774131g011  54 RNHREAEKRRRERIKSHLDRLRTILACDPkllylllFFFKVRTDKASLLAKAVERVRDL 112
                        78*************************777999999778889************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-1047119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.40251112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-754112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-1155121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-757118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.8E-4150201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MYRSLSVSRD GGNPGGSGAA VAMPGYFMGS FYPMEMGSGS GGDASMDRAL IASRNHREAE  60
KRRRERIKSH LDRLRTILAC DPKLLYLLLF FFKVRTDKAS LLAKAVERVR DLKQQTAEIT  120
ENQLFPTEND EIVVLPSSSS NGQGSVFEAS LCCEDRSDLL PELIETLRSL RLKTLRAEIA  180
TLGGRVRNVL VVAREKEEYD EEEAEDGEGS GGAFLRDALK ALVDQPVSDD RSKRRRKSVI  240
DAKYLRVG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008786854.11e-132transcription factor bHLH106-like
SwissprotO806742e-51BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2H3XPJ61e-130A0A2H3XPJ6_PHODC; transcription factor bHLH106-like
STRINGXP_008786854.11e-131(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]