PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s775611g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family CPP
Protein Properties Length: 448aa    MW: 49322.5 Da    PI: 7.6007
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s775611g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR438.9e-145190242
                TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                       +kk+CnCk+skClk+YCeCfa+g++C+  C+C++C+N+ e+
  PDK_30s775611g004 51 RKKNCNCKHSKCLKLYCECFASGVFCDG-CNCTNCCNNVEN 90
                       689*************************.********9875 PP
2TCR51.22.5e-16135174140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgC+Ckks ClkkYCeCf+a   Cse+CkC dCkN e
  PDK_30s775611g004 135 KHNKGCHCKKSGCLKKYCECFQASILCSENCKCMDCKNYE 174
                        589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-125090IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.80451175IPR005172CRC domain
PfamPF036386.0E-105287IPR005172CRC domain
SMARTSM011149.0E-20135176IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12138173IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEQGIQPAAS APSDFPSKKL VRQLDFTTAK LESPRSRARP LYEAKDGTPT RKKNCNCKHS  60
KCLKLYCECF ASGVFCDGCN CTNCCNNVEN ETARHEAVEA TLERNPNAFR PKIGSSPHAV  120
QDSREEIGDL SLVGKHNKGC HCKKSGCLKK YCECFQASIL CSENCKCMDC KNYEGSEERR  180
ALFRGDHGNA LYMQQAANAA LNGAIGPSGF LSPSASRKRK NQELLFSTSA KDQPIHRLGQ  240
FQQVSHLKTS VPATSLPSTP VAPSINPGPL GSSKVTYRSL LADIVQPEDV KELCKLLVVV  300
SGETAKTFAD RRAQEKLGER EDQTESSLAS SNHDRDELHK EPDAQKASAD ECSSGIHVDK  360
TRMEESVSDS ADGQRGGRPM SPGTLALMCD EQDTMFETSR NAGMPPRFPY NQDMSEVYAE  420
QERCVLTQFR DCLRRLVTFG RIKAVSND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-315218311131Protein lin-54 homolog
5fd3_B4e-315218311131Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793061.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-160TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2H3Y3X70.0A0A2H3Y3X7_PHODC; protein tesmin/TSO1-like CXC 5
STRINGXP_008793061.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-154Tesmin/TSO1-like CXC domain-containing protein