PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s776781g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 313aa MW: 34460.9 Da PI: 9.9741

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s776781g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52	1.9e-16	33	120	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ vl+L+e++++++ +r+klk+ +We++++++ + r+ ++p qCk+k+e+++kry+++ + + + ++s s+++++ +++ PDK_30s776781g003 33 EWSESGVLCLLEVYESKWLLRNRAKLKGSDWEDIARQVsarcSGRKALKTPAQCKNKIESMKKRYRAESAAAHE--PKSCSSWQFYARMD 120 5*****************************99999877667777788**************9999988..788889****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-19	31	121	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MDSAQGGINH LPAGPGHSPV PAPRGPDKGK RDEWSESGVL CLLEVYESKW LLRNRAKLKG 60 SDWEDIARQV SARCSGRKAL KTPAQCKNKI ESMKKRYRAE SAAAHEPKSC SSWQFYARMD 120 GLLKGPPDCM AQTKSNHNIN LQALPKVAAE VEVEGRLKDS NQDDASNALP VDANAVNKDN 180 DSKKESKGDS DASAPRNKEA NAEDGAGKDG NPSKKRRKGS GDEVADSIRL LAQSILKIEQ 240 ARIEMYKDSE RMRVEAEIKR GEMELKRTEI IAKTQLQIVK LLAKKSRGRS NKSEGSSSRI 300 ELDMLPRRDG MGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	213	217	KKRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026658272.1	0.0	trihelix transcription factor ASIL1-like isoform X5
TrEMBL	A0A3Q0HXX3	0.0	A0A3Q0HXX3_PHODC; trihelix transcription factor ASIL1-like isoform X5
STRING	XP_008782065.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	5e-64	sequence-specific DNA binding transcription factors