PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s777581g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 532aa    MW: 58715.8 Da    PI: 6.2591
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s777581g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.6e-3187144260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkve+s  d++++ei+Y+g+Hnh+k
  PDK_30s777581g001  87 EDGYNWRKYGQKHVKGSEYPRSYYKCTHQSCQVKKKVEHSL-DGQTTEIIYKGTHNHPK 144
                        7****************************************.***************85 PP
2WRKY103.89.7e-33302359259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         Dgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  PDK_30s777581g001 302 VDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 359
                        5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-2877145IPR003657WRKY domain
SuperFamilySSF1182908.63E-2585145IPR003657WRKY domain
SMARTSM007743.8E-3486144IPR003657WRKY domain
PfamPF031066.3E-2487143IPR003657WRKY domain
PROSITE profilePS5081122.97487145IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-36286361IPR003657WRKY domain
SuperFamilySSF1182904.45E-28293361IPR003657WRKY domain
PROSITE profilePS5081136.805296361IPR003657WRKY domain
SMARTSM007741.1E-36301360IPR003657WRKY domain
PfamPF031064.7E-25303359IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MQMDFEDQAC ITKQEKGYAS DLQRDVKFSE DNMVETKCSS VQTCYHPPLS NPAHHLEDLS  60
NGEDRQSGQI LEEDQSFSSS GVGRPSEDGY NWRKYGQKHV KGSEYPRSYY KCTHQSCQVK  120
KKVEHSLDGQ TTEIIYKGTH NHPKPQPSRR SAFGSSFLMS EISDSAAGFG SITDVEGGSI  180
WRNSQRGSKD KNCVDLRADS LELTSSTSVV TELSDPLSTA QGKCSNILTD IPELSSTLAS  240
EGDDEDGATQ GSMPFEDDDE GDETESKRRK KESCVIDSNP ASRAVREPRV VVQTVSEVDI  300
LVDGYRWRKY GQKVVKGNPN PRSYYKCTHP GCSVRKHVER ASHDLKSVIT TYEGKHNHEV  360
PVARNNNRMN SGSNMQPASN AQTSMTLPGS SSASGPQTHV QDLAPCFDKK MEFGSGNFTA  420
SYAGCFTGNS KIGASPCYEM QMPLLQSMSF STFGLNNSYA AAHQAIPVSN IIQDFSISFP  480
TSHVGHSNLL LAGYDVNNHG RPSSIELQPL IMHQCIESDM KHFRQPKPEQ DN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-3576361277Probable WRKY transcription factor 4
2lex_A8e-3576361277Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799188.20.0probable WRKY transcription factor 3
SwissprotQ9FG774e-89WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2H3YID40.0A0A2H3YID4_PHODC; probable WRKY transcription factor 3
STRINGXP_008799188.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-88WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]