PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s778521g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HB-other

Protein Properties

Length: 135aa MW: 15943.9 Da PI: 7.6786

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s778521g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.2	2.7e-08	81	114	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + PDK_30s778521g002 81 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 114 469*****************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.774	55	118	IPR001356	Homeobox domain
SMART	SM00389	6.0E-11	57	122	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.37E-16	57	122	IPR009057	Homeodomain-like
CDD	cd00086	2.76E-11	58	119	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.6E-26	62	121	IPR009057	Homeodomain-like
Pfam	PF05920	2.7E-18	75	114	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MSDDEDELQQ GCPLDMTVDH EHDMMGFGPL LPTESERSLM DRGFRSRIED VREEILRKRR 60 AGKLPGDTTS VLKQWWQQHS KWPYPTEDDK AKLVEETGLQ LKQINNWFIN QRKRNWHSNS 120 QSATTLKSKR RSLYA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1x2n_A	5e-14	58	123	8	73	Homeobox protein PKNOX1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in secondary cell wall biosynthesis. {ECO:0000269\|PubMed:15980264}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017697186.1	2e-90	homeobox protein knotted-1-like 3
Swissprot	Q9FPQ8	4e-70	KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBL	A0A2H3ZM19	4e-89	A0A2H3ZM19_PHODC; homeobox protein knotted-1-like 3
STRING	XP_008783524.1	1e-89	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP564	38	169

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	2e-72	KNOTTED-like homeobox of Arabidopsis thaliana 7

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He JB, et al. KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis. J Integr Plant Biol, 2018. 60(6): p. 514-528 [PMID:29393579]