PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s779001g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 139aa    MW: 16181 Da    PI: 10.4724
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s779001g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.11.3e-2976123451
                        -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF   4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                        enk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs+ gklye++s
  PDK_30s779001g001  76 ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNCGKLYEFCS 123
                        8*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-2966124IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-256787IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-2575126IPR002100Transcription factor, MADS-box
PfamPF003195.2E-2576121IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.22676125IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-2587102IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-25102123IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MSNERPSLQL KGSFLSKIKT AITFDYWWRL SHFFLILPLF EDHDVRGLGI RKNLCPKLSQ  60
RLPSSFEREK RTGERENKIN RQVTFAKRRN GLLKKAYELS VLCDAEVALI IFSNCGKLYE  120
FCSSSRSQGK GMLLLRFLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1c7u_A3e-15801251560MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_B3e-15801251560MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4118452e-64AF411845.1 Elaeis guineensis MADS box transcription factor (AGL2-3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_008779700.13e-55(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.33e-28MIKC_MADS family protein