PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s779351g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 359aa MW: 40198.6 Da PI: 8.4107

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s779351g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.5	2.1e-56	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL kkv + ++++ ++i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+ PDK_30s779351g001 17 LPPGFRFHPTDEELITHYLSKKVMDANFNA-RAIGEVDLNKWEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEI 107 79*************************9.89***********888999********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ +++lvg+kktLvfy+grapkgek++Wvmheyrle PDK_30s779351g001 108 YR-GKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 143 .999*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-63	11	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.927	17	167	IPR003441	NAC domain
Pfam	PF02365	1.7E-29	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MEQRAVDVRE GQEHMDLPPG FRFHPTDEEL ITHYLSKKVM DANFNARAIG EVDLNKWEPW 60 DLPWRAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL 120 VFYRGRAPKG EKSNWVMHEY RLEGKYSVYN LPKTAKNEWV ICRVFHKISS GKKAMGLVRV 180 GSSFVDELGS SLLPPLMDAP FTSMNTSSAS DLAHVTCFSS AMEGPKVHEE LLAEYLNSPF 240 LSASANPSEV PPPSLLLAKM SLPSSSHARQ GASNLGGMQY SGGSLVQLLA SDGYGLKQSF 300 KAEREMLSVS QETGLTTDMN PEISSVVSNN DMGRQSFDRR EVPSTSAGPL LINESLWNY

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MEQRAVDVRE GQEHMDLPPG FRFHPTDEEL ITHYLSKKVM DANFNARAIG EVDLNKWEPW  60
DLPWRAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL  120
VFYRGRAPKG EKSNWVMHEY RLEGKYSVYN LPKTAKNEWV ICRVFHKISS GKKAMGLVRV  180
GSSFVDELGS SLLPPLMDAP FTSMNTSSAS DLAHVTCFSS AMEGPKVHEE LLAEYLNSPF  240
LSASANPSEV PPPSLLLAKM SLPSSSHARQ GASNLGGMQY SGGSLVQLLA SDGYGLKQSF  300
KAEREMLSVS QETGLTTDMN PEISSVVSNN DMGRQSFDRR EVPSTSAGPL LINESLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	14	173	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-54	14	173	17	174	NAC domain-containing protein 19
3swm_B	2e-54	14	173	17	174	NAC domain-containing protein 19
3swm_C	2e-54	14	173	17	174	NAC domain-containing protein 19
3swm_D	2e-54	14	173	17	174	NAC domain-containing protein 19
3swp_A	2e-54	14	173	17	174	NAC domain-containing protein 19
3swp_B	2e-54	14	173	17	174	NAC domain-containing protein 19
3swp_C	2e-54	14	173	17	174	NAC domain-containing protein 19
3swp_D	2e-54	14	173	17	174	NAC domain-containing protein 19
4dul_A	1e-54	14	173	14	171	NAC domain-containing protein 19
4dul_B	1e-54	14	173	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008783580.1	0.0	NAC domain-containing protein 92-like
Refseq	XP_008783588.1	0.0	NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	1e-125	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2H3XGV0	0.0	A0A2H3XGV0_PHODC; NAC domain-containing protein 92-like
STRING	XP_008783580.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-128	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]