PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s779621g008
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 168aa    MW: 18621.4 Da    PI: 4.4211
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s779621g008genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.0004981421848
                        HHHHHHHCTSCCC.................TTS-STCHHHHHHHH CS
                HLH  18 safeeLrellPkas..............kapskKlsKaeiLekAv 48 
                        s++e+L   +P+                 a+++KlsK e Le+Av
  PDK_30s779621g008  98 SKYEQLEHAVPPEDgqthddlstsggksDASDEKLSKYEQLEHAV 142
                        67899999999955599999999999999***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5090914.60818105IPR004152GAT domain
Gene3DG3DSA:1.20.58.1601.0E-2020105IPR004152GAT domain
SuperFamilySSF890091.36E-1921104No hitNo description
PfamPF031271.9E-1531104IPR004152GAT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0005622Cellular Componentintracellular
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDHQKREAGE LAYHSVALSM EEKKQILVVT RNSIEILSSI FNSETQEKAT KDDLMLSMVA  60
KCKESQPVIQ RIIESIGDDE SMLFEALNVH DELQQALSKY EQLEHAVPPE DGQTHDDLST  120
SGGKSDASDE KLSKYEQLEH AVPPEHGQTH DDLSSSGGRK SDGSDEKA
Functional Description ? help Back to Top
Source Description
UniProtBinds ubiquitin in vitro (PubMed:24316203). Might contribute to the loading of the ESCRT machinery (Probable). {ECO:0000269|PubMed:24316203, ECO:0000305|PubMed:16488176}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805226.11e-115TOM1-like protein 2
RefseqXP_008805228.11e-115TOM1-like protein 2
RefseqXP_017701002.11e-115TOM1-like protein 2
SwissprotQ9LNC66e-25TOL2_ARATH; TOM1-like protein 2
TrEMBLA0A2H3ZX261e-113A0A2H3ZX26_PHODC; TOM1-like protein 2
STRINGXP_008805226.11e-114(Phoenix dactylifera)
Publications ? help Back to Top
  1. Winter V,Hauser MT
    Exploring the ESCRTing machinery in eukaryotes.
    Trends Plant Sci., 2006. 11(3): p. 115-23
    [PMID:16488176]
  2. Richardson LG, et al.
    Protein-Protein Interaction Network and Subcellular Localization of the Arabidopsis Thaliana ESCRT Machinery.
    Front Plant Sci, 2011. 2: p. 20
    [PMID:22639582]
  3. Korbei B, et al.
    Arabidopsis TOL proteins act as gatekeepers for vacuolar sorting of PIN2 plasma membrane protein.
    Curr. Biol., 2013. 23(24): p. 2500-5
    [PMID:24316203]
  4. Moulinier-Anzola J,De-Araujo L,Korbei B
    Expression of Arabidopsis TOL genes.
    Plant Signal Behav, 2014. 9(3): p. e28667
    [PMID:24699223]