PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s783921g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 121aa    MW: 14302.4 Da    PI: 10.6754
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s783921g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.3e-171560147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg W + Ed +l ++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  PDK_30s783921g004 15 RGHWRPAEDSKLRELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 60
                       899*****************************.***********996 PP
2Myb_DNA-binding57.14.1e-1867110146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  PDK_30s783921g004  67 RRAFSEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 110
                        678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9041061IPR017930Myb domain
SMARTSM007174.6E-141463IPR001005SANT/Myb domain
SuperFamilySSF466898.24E-2915108IPR009057Homeodomain-like
PfamPF002492.1E-161560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-271668IPR009057Homeodomain-like
CDDcd001679.74E-121859No hitNo description
PROSITE profilePS5129426.72462116IPR017930Myb domain
SMARTSM007171.8E-1466114IPR001005SANT/Myb domain
PfamPF002496.7E-1567109IPR001005SANT/Myb domain
CDDcd001672.77E-1069109No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2169115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MALQQCGGSK GMETRGHWRP AEDSKLRELV AIYGPQNWNL IAEKLEGRSG KSCRLRWFNQ  60
LDPRINRRAF SEEEEEKLMA AHRLYGNKWA MIARLFPGRT DNAVKNHWHV IMARKYREHL  120
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-34141156107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6625923e-93KM662592.1 Ananas bracteatus clone 46432b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939814.17e-73transcription factor MYB52
SwissprotQ9SEZ44e-71MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2H3XHD65e-71A0A2H3XHD6_PHODC; transcription factor CSA-like
TrEMBLK9LVY63e-71K9LVY6_9ASPA; R2R3 MYB (Fragment)
STRINGXP_008783843.19e-72(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-73myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]