PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s785381g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 267aa    MW: 29318.8 Da    PI: 4.6787
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s785381g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-183577145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                       + +WT+eE+ llv a+k+ G++ W+ Ia++++ gR+++++k++w+
  PDK_30s785381g001 35 KEAWTEEEERLLVVAHKKVGNR-WAEIAKHIP-GRSENSIKNHWN 77
                       579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.883084IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-183382IPR009057Homeodomain-like
SuperFamilySSF466891.36E-153385IPR009057Homeodomain-like
SMARTSM007171.0E-163482IPR001005SANT/Myb domain
PfamPF002498.2E-173577IPR001005SANT/Myb domain
CDDcd001672.15E-153777No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MLVRNMAFGN GLRLLRSWLA GLGSSVEKDG IIIKKEAWTE EEERLLVVAH KKVGNRWAEI  60
AKHIPGRSEN SIKNHWNATR RRQDAKRKSK RKTAQAHESS SMSTTTQMED CMPSIEEFLN  120
QSTAGTAEEG GLQVGDVPDP CVLDSLDILL DFDDGDFSIA GVDQYCMSRA PPPALDCFHS  180
EANGLTTAGS DCTGTNNTPH LSSDSYISYL LNGAPSFSTD VFACADTEIP KDRASSSCER  240
ELDLIEMLSL QLSLGFMELI SQDAIFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1idy_A2e-203383353MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
1idz_A2e-203383353MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931156.14e-94transcription factor MYB119-like
TrEMBLA0A2H3ZHD44e-37A0A2H3ZHD4_PHODC; transcription factor MYB119-like
STRINGXP_008785587.11e-99(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2549955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-32myb domain protein 119