PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s786001g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

M-type_MADS

Protein Properties

Length: 199aa MW: 21898.8 Da PI: 6.3565

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s786001g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.5	3.6e-13	12	48	14	50
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kR++++ K A+ELS+LC++ +avi f+++gk +++ PDK_30s786001g002 12 RKRKETLKKAAYELSTLCGTPIAVICFAPNGKPDTWP 48 69*********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	5.36E-14	12	81	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-12	12	47	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.993	13	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MRKPETAFGH LRKRKETLKK AAYELSTLCG TPIAVICFAP NGKPDTWPED EGAVRDIVGR 60 HRSVGAEKRS KLHFDIPGYF AAQVRKTMCG QAWDPPPLDD IPEESLREMI SSLESAKEAV 120 KKQIQILKED SRCNQGDFLH GDDGREQQQG FPCNNPAFMA EFSNVPMVSK AAMDDGPGQG 180 HGAFVPMEAN ADLPRSSTA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008795554.1	1e-138	agamous-like MADS-box protein AGL30
TrEMBL	A0A2H3YAB8	1e-137	A0A2H3YAB8_PHODC; agamous-like MADS-box protein AGL30
STRING	XP_008795554.1	1e-138	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16694	4	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	3e-13	AGAMOUS-like 103