PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s786021g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 314aa MW: 35123.7 Da PI: 8.3967

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s786021g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.1	1.2e-55	5	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL +kv++ +++ ++i++vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+ PDK_30s786021g001 5 LPPGFRFHPTDEELITYYLIRKVSDFGFTA-KAIADVDLNKHEPWDLPGKASMGEKEWYFFSLRDRKYPTGMRANRATDAGYWKTTGKDKEI 95 79***********************999.88***********988999********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g lvg+kktLvfykgrapkgekt+Wvmheyrl PDK_30s786021g001 96 FH-CGVLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 130 .9******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-64	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	60.035	5	151	IPR003441	NAC domain
Pfam	PF02365	2.6E-28	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MEENLPPGFR FHPTDEELIT YYLIRKVSDF GFTAKAIADV DLNKHEPWDL PGKASMGEKE 60 WYFFSLRDRK YPTGMRANRA TDAGYWKTTG KDKEIFHCGV LVGMKKTLVF YKGRAPKGEK 120 TNWVMHEYRL QTKFAYRTTK EEWVVCRVFK KSSDGKKTQP YPSPLSTLLD SPCSTTSLNE 180 LGELDVSTLS NLVNTSNGPA SMQNDGSINN KVDMNMYMSW VLARDATSQT SLPLSSALLG 240 VGYSPSPAIL KAMPFNGYQP QGATNLASSS SFAVQGDPIL GSEPKLSFPP SSFRGTEVTQ 300 QEQPLDQESI WRGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-59	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-59	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-59	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-59	4	157	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-59	4	157	19	174	NAC domain-containing protein 19
3swm_B	4e-59	4	157	19	174	NAC domain-containing protein 19
3swm_C	4e-59	4	157	19	174	NAC domain-containing protein 19
3swm_D	4e-59	4	157	19	174	NAC domain-containing protein 19
3swp_A	4e-59	4	157	19	174	NAC domain-containing protein 19
3swp_B	4e-59	4	157	19	174	NAC domain-containing protein 19
3swp_C	4e-59	4	157	19	174	NAC domain-containing protein 19
3swp_D	4e-59	4	157	19	174	NAC domain-containing protein 19
4dul_A	4e-59	4	157	16	171	NAC domain-containing protein 19
4dul_B	4e-59	4	157	16	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008807109.1	0.0	NAC domain-containing protein 100-like
TrEMBL	A0A2H3Z1S3	0.0	A0A2H3Z1S3_PHODC; NAC domain-containing protein 100-like
STRING	XP_008807109.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7919	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	8e-98	NAC domain containing protein 58