PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s789261g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family SBP
Protein Properties Length: 223aa    MW: 23600.2 Da    PI: 8.5731
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s789261g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP70.33.8e-22176223148
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                        +CqvegC++dls ak yhr+h+vCe+hsk+p v+v+g+e+rfCqqCsr
  PDK_30s789261g001 176 CCQVEGCNVDLSGAKYYHRKHRVCETHSKSPRVIVAGQERRFCQQCSR 223
                        6**********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-22169223IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.435174223IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.32E-21175223IPR004333Transcription factor, SBP-box
PfamPF031101.5E-17177223IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEWNTKTSSL WEWDNLALFS GNSKQEQQTD WKIEVKGAGV IENGSLYSSG GGGGSGGGAC  60
SGSDLGNGSS SKSSISASID SSSKAGVKIS EFNFEAVNKD SMRVPDGGLS AAVVTAARSQ  120
EALIGLKLGK RTYFEDVCAG SNFNNPPSSS SSVSVVLPAS LVKKPRVTQQ TVQSTCCQVE  180
GCNVDLSGAK YYHRKHRVCE THSKSPRVIV AGQERRFCQQ CSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A2e-15174223352squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789607.11e-160squamosa promoter-binding-like protein 3
RefseqXP_008789608.11e-160squamosa promoter-binding-like protein 3
SwissprotA2X0Q66e-49SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z86e-49SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A2H3XW151e-159A0A2H3XW15_PHODC; squamosa promoter-binding-like protein 3
STRINGXP_008789607.11e-159(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-22squamosa promoter binding protein-like 2