PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s790411g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MIKC_MADS

Protein Properties

Length: 215aa MW: 24723.5 Da PI: 6.4043

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s790411g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.9	2e-26	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr+g++KKA+ELSvLCdae+ +iifs++gklye + PDK_30s790411g002 10 RIENPVHRQVTFCKRRAGLMKKAKELSVLCDAEIGIIIFSTHGKLYELA 58 8*********************************************965 PP
2	K-box	53.5	1e-18	82	175	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGed.LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek.elqeenkaLrkkl 98 e ++ ++++qe++ Lkkei L + +R + G++ e+++l+eL+ Le++Le +iR++K+++++++i+ l++k + l +n++L+kk+ PDK_30s790411g002 82 GEVNQPQESEQEISMLKKEIYLLHKCLRYMFGDGgAENMTLEELHALERHLEIWTYQIRATKMQIMFQEIQSLKNKVEgILTAANEYLQKKI 173 5667889***********************954899********************************9965278999*****9 PP K-box 99 ee 100 ee PDK_30s790411g002 174 EE 175 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.674	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.9E-35	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-28	1	75	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-27	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.90E-41	3	75	No hit	No description
Pfam	PF00319	5.3E-24	10	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.1E-27	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.5E-20	84	173	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	12.511	87	179	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MVRGKVQMRR IENPVHRQVT FCKRRAGLMK KAKELSVLCD AEIGIIIFST HGKLYELATK 60 GTMEGLIERY RKASGEVQTE GGEVNQPQES EQEISMLKKE IYLLHKCLRY MFGDGGAENM 120 TLEELHALER HLEIWTYQIR ATKMQIMFQE IQSLKNKVEG ILTAANEYLQ KKIEEQNGNL 180 DVAPTIEHQN GHFDAGPEIA DMPYPLTIPD ERFPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	1e-16	3	90	2	77	Myocyte-specific enhancer factor 2A
3kov_B	1e-16	3	90	2	77	Myocyte-specific enhancer factor 2A
3kov_I	1e-16	3	90	2	77	Myocyte-specific enhancer factor 2A
3kov_J	1e-16	3	90	2	77	Myocyte-specific enhancer factor 2A
3p57_A	1e-16	3	90	2	77	Myocyte-specific enhancer factor 2A
3p57_B	1e-16	3	90	2	77	Myocyte-specific enhancer factor 2A
3p57_C	1e-16	3	90	2	77	Myocyte-specific enhancer factor 2A
3p57_D	1e-16	3	90	2	77	Myocyte-specific enhancer factor 2A
3p57_I	1e-16	3	90	2	77	Myocyte-specific enhancer factor 2A
3p57_J	1e-16	3	90	2	77	Myocyte-specific enhancer factor 2A
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008783731.2	1e-151	LOW QUALITY PROTEIN: MADS-box transcription factor 26-like
Swissprot	A2YQK9	5e-88	MAD26_ORYSI; MADS-box transcription factor 26
Swissprot	Q0J8G8	5e-88	MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBL	A0A2H3XH75	1e-150	A0A2H3XH75_PHODC; LOW QUALITY PROTEIN: MADS-box transcription factor 26-like
STRING	XP_008783731.1	1e-157	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1491	36	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	5e-67	AGAMOUS-like 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Lee S, et al. Further characterization of a rice AGL12 group MADS-box gene, OsMADS26. Plant Physiol., 2008. 147(1): p. 156-68 [PMID:18354041] Khong GN, et al. OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice. Plant Physiol., 2015. 169(4): p. 2935-49 [PMID:26424158]