PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s790611g009
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 246aa    MW: 28140.5 Da    PI: 5.4663
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s790611g009genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.4e-141057148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT++Ed +lv  v ++G ++W+  a+  g++Rt+k+c++rw +yl
  PDK_30s790611g009 10 KGPWTEQEDIQLVWFVGLFGERRWDFLAKVSGLNRTGKSCRLRWVNYL 57
                       79********************************************97 PP
2Myb_DNA-binding56.56.3e-1863108148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rgr+T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  PDK_30s790611g009  63 RGRMTPQEEHLVLELHAKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.146557IPR017930Myb domain
SuperFamilySSF466895.72E-288104IPR009057Homeodomain-like
SMARTSM007173.7E-12959IPR001005SANT/Myb domain
PfamPF002499.3E-131057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-181164IPR009057Homeodomain-like
CDDcd001673.13E-81257No hitNo description
PROSITE profilePS5129426.94558112IPR017930Myb domain
SMARTSM007177.9E-1662110IPR001005SANT/Myb domain
PfamPF002493.2E-1663107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2465111IPR009057Homeodomain-like
CDDcd001671.41E-1065108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVMEKEDTRK GPWTEQEDIQ LVWFVGLFGE RRWDFLAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGRMTPQE EHLVLELHAK WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKRSSS  120
SPSPSSSSSN LSSSISDPPL EVGVEKHEGD GARVEGTSSL MTGLEEDGEG VPKSYPMEQI  180
WNDIATPELV GDLSFEGYKD IEAGNFSCPA PVTSPMWDYS SDSLWKIDDE EYKMFAPIAD  240
DTIRES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-26101124105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795619.10.0myb-related protein MYBAS1-like
SwissprotQ53NK63e-85MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A2H3YA750.0A0A2H3YA75_PHODC; myb-related protein MYBAS1-like
STRINGXP_008795619.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-75myb domain protein 48
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]