PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s791351g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 286aa    MW: 31186 Da    PI: 10.1316
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s791351g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-15103147347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+  ++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  PDK_30s791351g001 103 PWTEEEHRTFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 147
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.812318IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.103.8E-4423IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.82496152IPR017930Myb domain
SuperFamilySSF466894.52E-1897152IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-1899150IPR006447Myb domain, plants
SMARTSM007175.9E-12100150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-12100146IPR009057Homeodomain-like
CDDcd001672.25E-10103148No hitNo description
PfamPF002491.7E-12103147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MARKCSYCGK NGHNSRTCSS PRSLGGAAGL RLFGVQLHVA SPIKKSFSME CLSSSSYPAS  60
SSSSPSSSSS SLASMEENAD KISNGYLSEG LMGRAQERKK GVPWTEEEHR TFLAGLEKLG  120
KGDWRGISRH FVTTRTPTQV ASHAQKYFLR HNTLRKKKRR SSLFDVVGSR ERSVPYDDSS  180
RLRDQSSSEL EIPTPTACHK AGARTTIRLD ASEQETQMPS SLNLMSTCAV SVSTSPSIMS  240
RSSSSMAEAH IQLQEPDLEL TIAPMRQPNR SEASPSSLFM GTIRAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798617.10.0transcription factor KUA1-like
SwissprotQ7XC573e-51MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A2H3YGW40.0A0A2H3YGW4_PHODC; transcription factor KUA1-like
STRINGXP_008798617.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-51MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]