PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s791711g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 76aa    MW: 8646.81 Da    PI: 12.0377
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s791711g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.39.3e-092758337
                AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfg 37
                       y+GV+++++ grW A+I  +s    +k  +lg+f 
  PDK_30s791711g001 27 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFK 58
                       9***************999754...4*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.75E-72558IPR016177DNA-binding domain
PROSITE profilePS510329.2822676IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-62658IPR001471AP2/ERF domain
SMARTSM003800.00132675IPR001471AP2/ERF domain
PfamPF008471.9E-42757IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MKNMSRQEYV AHLRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVSGNK DLYLGTFKVL  60
SKNVVTGNDS GFVHQA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028097640.12e-34AP2-like ethylene-responsive transcription factor CRL5
RefseqXP_028099498.13e-34AP2-like ethylene-responsive transcription factor CRL5
RefseqXP_028113942.18e-35AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-33CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A453BNM28e-34A0A453BNM2_AEGTS; Uncharacterized protein
TrEMBLA0A453BNW31e-33A0A453BNW3_AEGTS; Uncharacterized protein
STRINGOS07T0124700-011e-33(Oryza sativa)
STRINGGRMZM2G008234_P017e-34(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1858759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-34AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]