PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s793471g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 236aa MW: 26642.6 Da PI: 5.5088

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s793471g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	141.5	5.1e-44	5	134	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 ppG+rF Pt+eel+++yL++k+e+++ ++e+vi+ vd+y+++P++Lp + + + + ++w+fF++r++++a+g r++r+t sgyWkatg+ PDK_30s793471g001 5 PPGLRFYPTEEELLNFYLRNKLENTRQDMERVIPVVDVYSYDPEQLPpMsgeA-SIqDPEQWFFFCPRQEREAQGGRPTRTTPSGYWKATGS 95 8**************************99***********9644532.2224569*************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s+++ +g+kkt+vfy+grap+g+kt+W m+ey+ PDK_30s793471g001 96 PSFVFSSQNIRIGVKKTMVFYTGRAPTGTKTKWKMNEYK 134 ************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.06E-48	3	162	IPR003441	NAC domain
PROSITE profile	PS51005	47.18	4	162	IPR003441	NAC domain
Pfam	PF02365	3.8E-24	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MTSRPPGLRF YPTEEELLNF YLRNKLENTR QDMERVIPVV DVYSYDPEQL PPMSGEASIQ 60 DPEQWFFFCP RQEREAQGGR PTRTTPSGYW KATGSPSFVF SSQNIRIGVK KTMVFYTGRA 120 PTGTKTKWKM NEYKALEEAA ASTSSTPPKL RKEFSVCRVY IKSGTLRSFD RRPSAAVAMN 180 SESQRNPEAS SSLANPQIAE RTSSQGSFSS GDDGSQPIAA DGTFDWDEFI NSEEFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-35	3	162	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-35	3	162	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-35	3	162	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-35	3	162	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-35	3	162	19	168	NAC domain-containing protein 19
3swm_B	5e-35	3	162	19	168	NAC domain-containing protein 19
3swm_C	5e-35	3	162	19	168	NAC domain-containing protein 19
3swm_D	5e-35	3	162	19	168	NAC domain-containing protein 19
3swp_A	5e-35	3	162	19	168	NAC domain-containing protein 19
3swp_B	5e-35	3	162	19	168	NAC domain-containing protein 19
3swp_C	5e-35	3	162	19	168	NAC domain-containing protein 19
3swp_D	5e-35	3	162	19	168	NAC domain-containing protein 19
4dul_A	4e-35	3	162	16	165	NAC domain-containing protein 19
4dul_B	4e-35	3	162	16	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008776160.1	1e-174	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	4e-77	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2H3WZR8	1e-172	A0A2H3WZR8_PHODC; NAC domain-containing protein 90-like
STRING	XP_008776160.1	1e-173	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	7e-71	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]