PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s793601g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 359aa    MW: 40467.2 Da    PI: 5.9655
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s793601g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.62.2e-48111391128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPt+eel+++yLkkkv+ +k++l +vi+++d++k+ePwd++ k ++ +  ++ewy Fs++dkky+tg+r+nrat++g+Wkatg+d
  PDK_30s793601g001  11 VPPGFRFHPTEEELLNYYLKKKVACEKIDL-DVIRDIDLTKLEPWDIQdKcRIGSaPQNEWYLFSHNDKKYPTGTRTNRATAAGFWKATGRD 101
                        69****************************.9***************943433332566********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k +++ + + +g +ktLvfykgrap+g k+dW+mheyrl
  PDK_30s793601g001 102 KVIHT-SFKRIGKRKTLVFYKGRAPHGLKSDWIMHEYRL 139
                        ***99.8889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-548175IPR003441NAC domain
PROSITE profilePS5100553.71511175IPR003441NAC domain
PfamPF023652.4E-2512139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGISVNGQSC VPPGFRFHPT EEELLNYYLK KKVACEKIDL DVIRDIDLTK LEPWDIQDKC  60
RIGSAPQNEW YLFSHNDKKY PTGTRTNRAT AAGFWKATGR DKVIHTSFKR IGKRKTLVFY  120
KGRAPHGLKS DWIMHEYRLD DHLGTNNYSS NASSPAGEAA TAQEEGWVVC RVFKKKNYQT  180
LLTHPHSSSS FISDARTQMS RSCNDEPLDQ ILQYFGRSCK QESDAILSID NMNNEDYLRP  240
IETALSNVKV PTLESPSLQS LPSFAPEVDP VENNEAIMDI ELVCNSMPTL SDWPSMNDEN  300
GSHIGSGYLE ARKQTPYSNE PSLGFLPSNG FFSNSHDCRY GDGDPWIFMQ SVSSGADHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-47817714167NO APICAL MERISTEM PROTEIN
1ut4_B1e-47817714167NO APICAL MERISTEM PROTEIN
1ut7_A1e-47817714167NO APICAL MERISTEM PROTEIN
1ut7_B1e-47817714167NO APICAL MERISTEM PROTEIN
3swm_A1e-47817717170NAC domain-containing protein 19
3swm_B1e-47817717170NAC domain-containing protein 19
3swm_C1e-47817717170NAC domain-containing protein 19
3swm_D1e-47817717170NAC domain-containing protein 19
3swp_A1e-47817717170NAC domain-containing protein 19
3swp_B1e-47817717170NAC domain-containing protein 19
3swp_C1e-47817717170NAC domain-containing protein 19
3swp_D1e-47817717170NAC domain-containing protein 19
4dul_A1e-47817714167NAC domain-containing protein 19
4dul_B1e-47817714167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775289.10.0NAC domain-containing protein 43
SwissprotQ84WP61e-102NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A2H3WXR50.0A0A2H3WXR5_PHODC; NAC domain-containing protein 43
STRINGXP_008775289.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.13e-94NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]