PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s795471g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 182aa    MW: 20299.6 Da    PI: 4.5684
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s795471g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.9e-091222446
                       HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                       W++Ia++++ gRt++++k++w++
  PDK_30s795471g001  1 WSKIASYFP-GRTDNEIKNHWNT 22
                       *********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002491.3E-6122IPR001005SANT/Myb domain
PROSITE profilePS5129417.109128IPR017930Myb domain
SuperFamilySSF466891.64E-7132IPR009057Homeodomain-like
CDDcd001671.06E-6122No hitNo description
Gene3DG3DSA:1.10.10.602.0E-10128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
WSKIASYFPG RTDNEIKNHW NTRIKKRLKL LGLDPVTHMP LKQPAKGGGL KSDSDSESNP  60
PQVQGKSIEI MDLVVSGSQE ELLVKNEKQK EVQFDSNGTE ALLHGDVMSW ENLDIEEMKP  120
RPDPSSSSGA SFSMDDTLHP SSVQRDSSLG GSNLCWFDTT DSFPSWEALY PLEDIFPFGN  180
FP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807214.11e-130protein ODORANT1
TrEMBLA0A2H3Z2061e-129A0A2H3Z206_PHODC; protein ODORANT1
STRINGXP_008807214.11e-130(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5070822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.13e-19myb domain protein 40