PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s795811g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 438aa MW: 51275.6 Da PI: 6.1633

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s795811g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.1	1e-22	123	218	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+++v++Li++ ++++e+ ++ +kk++W+ vsk+m+e+ + +sp+qC++k+++lnkryk+++e+ +++ +++++++ ++ PDK_30s795811g001 123 KWTDRMVKLLITVISYLNEDTSELDisakrkltmlQKKGKWKLVSKVMAEKNCYVSPQQCEDKFNDLNKRYKRLTEILGRGtSCKVVENPAL 214 7*****************998544455778888********************************************56899988888 PP trihelix 82 fdql 85 +d + PDK_30s795811g001 215 LDYM 218 8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.3E-21	121	245	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MEGNMSAGNM IPGSSPYGAF DLQVSMAMQQ QQNPHGCFHH QQQHPNQSQH QGPMVHQPMN 60 NIFCQSVGQM SECEQQPMLQ MMDYNKVDYG KNTTSEDDDT EDGADLPNES VREKKAAPWQ 120 RVKWTDRMVK LLITVISYLN EDTSELDISA KRKLTMLQKK GKWKLVSKVM AEKNCYVSPQ 180 QCEDKFNDLN KRYKRLTEIL GRGTSCKVVE NPALLDYMPY ISEKAKNDVR KILSSKHLYY 240 EEMCSYHNKN RLHLPADPEV QRSVQLLLKI SDDHDTKRAA RDDFDEDDQD DSDDREDDVE 300 DNDTLFRDTG GSSFSKRMKQ GLEREDLSFT NSLGPQINPR RPYSQSSSFD VNQAFPESSA 360 SWAQKQLIRS RAIQLEEQRL QIQAEMLEIE RRRFKWKHFC RKKDSELDRM RMQNERMKLE 420 NERLAFELKR KELELELY

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MEGNMSAGNM IPGSSPYGAF DLQVSMAMQQ QQNPHGCFHH QQQHPNQSQH QGPMVHQPMN  60
NIFCQSVGQM SECEQQPMLQ MMDYNKVDYG KNTTSEDDDT EDGADLPNES VREKKAAPWQ  120
RVKWTDRMVK LLITVISYLN EDTSELDISA KRKLTMLQKK GKWKLVSKVM AEKNCYVSPQ  180
QCEDKFNDLN KRYKRLTEIL GRGTSCKVVE NPALLDYMPY ISEKAKNDVR KILSSKHLYY  240
EEMCSYHNKN RLHLPADPEV QRSVQLLLKI SDDHDTKRAA RDDFDEDDQD DSDDREDDVE  300
DNDTLFRDTG GSSFSKRMKQ GLEREDLSFT NSLGPQINPR RPYSQSSSFD VNQAFPESSA  360
SWAQKQLIRS RAIQLEEQRL QIQAEMLEIE RRRFKWKHFC RKKDSELDRM RMQNERMKLE  420
NERLAFELKR KELELELY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	390	402	RRRFKWKHFCRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008785828.1	0.0	uncharacterized protein LOC103704355
TrEMBL	A0A2H3XM15	0.0	A0A2H3XM15_PHODC; uncharacterized protein LOC103704355
STRING	XP_008785828.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-120	sequence-specific DNA binding transcription factors