PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s795882g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NF-YB

Protein Properties

Length: 111aa MW: 12428.8 Da PI: 4.7268

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s795882g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	171.1	1.2e-53	25	111	2	88
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+ea+dkcqrekrktingddllwa++tlGfedyveplkvyl+ PDK_30s795882g001 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEAADKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLH 111 89***********************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.5E-50	21	111	IPR009072	Histone-fold
SuperFamily	SSF47113	3.88E-37	27	111	IPR009072	Histone-fold
Pfam	PF00808	8.9E-29	30	94	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.2E-18	58	76	No hit	No description
PRINTS	PR00615	1.2E-18	77	95	No hit	No description
PRINTS	PR00615	1.2E-18	96	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MPDSDNESGG QNNSNNNAGE YSSPREQDRF LPIANVSRIM KKALPANAKI SKDAKETVQE 60 CVSEFISFIT GEAADKCQRE KRKTINGDDL LWAMTTLGFE DYVEPLKVYL H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	6e-48	19	111	1	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT017830	1e-116	BT017830.1 Zea mays clone EL01N0508H10.c mRNA sequence.
GenBank	EU956383	1e-116	EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008778301.1	3e-80	nuclear transcription factor Y subunit B-3-like
Refseq	XP_017702068.1	3e-80	nuclear transcription factor Y subunit B-3-like
Swissprot	Q75IZ7	2e-68	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A2H3X4U0	6e-79	A0A2H3X4U0_PHODC; nuclear transcription factor Y subunit B-3-like
STRING	XP_008778301.1	1e-79	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	6e-62	nuclear factor Y, subunit B3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]