PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s796641g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LBD
Protein Properties Length: 194aa    MW: 21049.9 Da    PI: 6.0843
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s796641g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601352.9e-42351341100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+C+++Cvlapyfp ++p kf  +h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+ +l+a
  PDK_30s796641g001  35 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTTAHRVFGASNIIKLLQDLPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVGELQA 126
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la++++e
  PDK_30s796641g001 127 QLARAQAE 134
                        ***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.10534135IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-4235132IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGSSDTTTFR HHPSSSPSSS PTSSPPTPPP VVLSPCAACK ILRRRCVDKC VLAPYFPPTE  60
PLKFTTAHRV FGASNIIKLL QDLPESQRAD AVSSMVYEAN ARIRDPVYGC AGAICQLQKQ  120
VGELQAQLAR AQAELVNMQA QNANLIALIC MEMAQSQQPS TDSLIITSPY ASQNDGFFLD  180
DSSHGSLWED PLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-433413710113LOB family transfactor Ramosa2.1
5ly0_B5e-433413710113LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795252.11e-143LOB domain-containing protein 1
SwissprotQ9LQR01e-75LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2H3Y9601e-141A0A2H3Y960_PHODC; LOB domain-containing protein 1
STRINGXP_008795252.11e-142(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-68LOB domain-containing protein 1