PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s799101g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 681aa    MW: 75859.5 Da    PI: 6.851
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s799101g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.11.4e-22122222198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +++a+e+       ++++   ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   
  PDK_30s799101g001 122 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQHPP--WQELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSIFVSSKRLVAGDAFIFL-- 209
                        99*****************************654444..458************************************************.. PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        + +++el+v+v+r
  PDK_30s799101g001 210 RAENGELRVGVRR 222
                        449999*****97 PP
2Auxin_resp114.68.8e-38248330183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha+st++ F+v+Y+Pr+s+seF+++v+k+++a ++k+svGmRfkm+fe+++++err+sGt++gv ++ p+rW +S+WrsLk
  PDK_30s799101g001 248 ASHAVSTGTLFSVFYKPRTSRSEFIISVNKYLEAKNHKLSVGMRFKMRFEGDEAPERRFSGTIIGVGETTPSRWADSEWRSLK 330
                        789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-42113251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-40119237IPR015300DNA-binding pseudobarrel domain
CDDcd100179.25E-21120222No hitNo description
PROSITE profilePS5086311.293122224IPR003340B3 DNA binding domain
SMARTSM010191.7E-21122224IPR003340B3 DNA binding domain
PfamPF023621.8E-20122222IPR003340B3 DNA binding domain
PfamPF065071.5E-35248330IPR010525Auxin response factor
PfamPF023094.1E-7476588IPR033389AUX/IAA domain
PROSITE profilePS5174527.329552645IPR000270PB1 domain
SuperFamilySSF542776.38E-12554630No hitNo description
PfamPF023092.8E-6599642IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAFPPPHSSS GGLPDVLYRE LWHACAGPLV TVPRDGERVY YFPQGHMEQL EASTNQGLDQ  60
HMPLFNLPSK ILCRVVHVQL RAEPDTDEVY SQITLLPEPD QSEVTSPDSP LPEPERCIVH  120
SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMSQHPPWQ ELVAKDLHGN EWHFRHIFRG  180
QPRRHLLTTG WSIFVSSKRL VAGDAFIFLR AENGELRVGV RRLMRQLNNM PSSVISSHSM  240
HLGVLATASH AVSTGTLFSV FYKPRTSRSE FIISVNKYLE AKNHKLSVGM RFKMRFEGDE  300
APERRFSGTI IGVGETTPSR WADSEWRSLK VQWDEPSSIP RPDRVSPWEL EPLVAATPPT  360
SQPTQRNKRA RPPASPSITP DISSVFGLWK SPVESTQTLS FSGLQRGRDL YPSSSPTSLF  420
SSTSKPASKG SNTGSLAVMN RPAYWPVRTD SQTESFSASI NREPCEKKQD TGTGCRLFGI  480
QLIESSAVEE TSPPANVSAA IGEVHPVKSL EEDSDRQSQP SNVNRSDAPA VSSEPEKSCL  540
RSSQETQSRQ LRSCTKVHMH GMAVGRAVDL TRVDGYDKLL QKLEEMFNIK GELTGPVKQW  600
QVVYTDDEDD MMLVGDDPWL EFCSMVRKIY IYTCEEAKRL SPKVKLPVIS DAIKPGLKKS  660
SSDADSARNR PDDPDAADKE C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.01135313355Auxin response factor 1
4ldw_A0.01135313355Auxin response factor 1
4ldw_B0.01135313355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008786460.10.0auxin response factor 7-like isoform X2
RefseqXP_026659536.10.0auxin response factor 7-like isoform X1
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A2H3XNQ70.0A0A2H3XNQ7_PHODC; Auxin response factor
TrEMBLA0A3Q0HY700.0A0A3Q0HY70_PHODC; Auxin response factor
STRINGXP_008786460.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]