PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s804231g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 490aa MW: 54077.8 Da PI: 7.1044

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s804231g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	5.9e-16	39	83	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++G W++I +++g ++t+ q++s+ qk+ PDK_30s804231g001 39 REKWTEEEHKKFLEALQLYGRA-WRRIEEYIG-TKTAVQIRSHAQKF 83 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.22E-16	33	86	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.3	34	88	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.5E-17	37	86	IPR006447	Myb domain, plants
SMART	SM00717	1.3E-12	38	86	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-9	39	79	IPR009057	Homeodomain-like
Pfam	PF00249	5.4E-14	39	82	IPR001005	SANT/Myb domain
CDD	cd00167	6.30E-10	41	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MHVDVKAKST CGLQSNEVTS YGDELIHKVR KPYTITKQRE KWTEEEHKKF LEALQLYGRA 60 WRRIEEYIGT KTAVQIRSHA QKFFSKVHCP SSSNHFSTIL CPWLPIEIPP PRPKRKPLHP 120 YPRKLGHSSS KRIAILKQLE KPSLQIPSAN EQENGSPTSV LSAIGSDTLG SFFLNPPNSC 180 QSPTLSVGEE NLAAESNKFQ LPASGAIALT IGEQPAEDLG QCPDGHAPTE EISSIEAPAP 240 TLKLFGRTVL VINSDKPSSS NIGNMVQFVK PSPTADLNAH CGNNDVNLHA PTELALQKAT 300 HGVFSEAQGR SAWNPLDGVD FKYLGARSRT GGMRPLSHGL PFVGENTTET SILLLPWWSF 360 YGNLPFPFIH QQNISATQHP PQSWTGRVDD KEIQRECSWT GSNTTSVCEV GVGDQNAVVD 420 WQKEENPTKE PAPTLGLKPT DHSAFNIKNS GSDKSTRGFM PCKRCAVESE MQHSQTSNED 480 GEDQMIRLYL

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MHVDVKAKST CGLQSNEVTS YGDELIHKVR KPYTITKQRE KWTEEEHKKF LEALQLYGRA  60
WRRIEEYIGT KTAVQIRSHA QKFFSKVHCP SSSNHFSTIL CPWLPIEIPP PRPKRKPLHP  120
YPRKLGHSSS KRIAILKQLE KPSLQIPSAN EQENGSPTSV LSAIGSDTLG SFFLNPPNSC  180
QSPTLSVGEE NLAAESNKFQ LPASGAIALT IGEQPAEDLG QCPDGHAPTE EISSIEAPAP  240
TLKLFGRTVL VINSDKPSSS NIGNMVQFVK PSPTADLNAH CGNNDVNLHA PTELALQKAT  300
HGVFSEAQGR SAWNPLDGVD FKYLGARSRT GGMRPLSHGL PFVGENTTET SILLLPWWSF  360
YGNLPFPFIH QQNISATQHP PQSWTGRVDD KEIQRECSWT GSNTTSVCEV GVGDQNAVVD  420
WQKEENPTKE PAPTLGLKPT DHSAFNIKNS GSDKSTRGFM PCKRCAVESE MQHSQTSNED  480
GEDQMIRLYL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008794529.1	0.0	uncharacterized protein LOC103710542 isoform X1
TrEMBL	A0A2H3Y7P1	0.0	A0A2H3Y7P1_PHODC; uncharacterized protein LOC103710542 isoform X1
STRING	XP_008794529.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2722	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	3e-39	MYB_related family protein