PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s806661g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 297aa    MW: 32509.7 Da    PI: 6.7961
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s806661g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.7e-33100156259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK+vkgse+prsYYrCt+++Cpvkkkve+s  d++++ei+Y+g+Hnh+
  PDK_30s806661g003 100 DDGYNWRKYGQKMVKGSEYPRSYYRCTHPNCPVKKKVEHSL-DGQITEIIYKGQHNHR 156
                        8****************************************.***************7 PP
2WRKY35.71.7e-11276297122
                        ---SS-EEEEEEE--TT-SS-E CS
               WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                        ldDgy+WrKYGqK+vkg+++pr
  PDK_30s806661g003 276 LDDGYRWRKYGQKVVKGNPHPR 297
                        59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-3094158IPR003657WRKY domain
SuperFamilySSF1182905.23E-2797158IPR003657WRKY domain
SMARTSM007741.1E-3799157IPR003657WRKY domain
PfamPF031068.2E-26100156IPR003657WRKY domain
PROSITE profilePS5081123.204100158IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-13262297IPR003657WRKY domain
SuperFamilySSF1182909.55E-10268297IPR003657WRKY domain
PROSITE profilePS5081116.352271297IPR003657WRKY domain
PfamPF031062.4E-7277297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEQLLMTALQ GNFGMSHQQA LAQVTAQAAQ FQFKVLNHAE YPSCLSVATA TSLAQDNVTP  60
IQEMSTLTSN TDNNTLKSTE GPHSDRRSQP TAVIVDKPAD DGYNWRKYGQ KMVKGSEYPR  120
SYYRCTHPNC PVKKKVEHSL DGQITEIIYK GQHNHRQPQP NKHAKEGGTL PSGSNEFNGN  180
AGIPANSEPG SLVYPGNFSR SNETMAAPSA SKGDYGTAEQ LSGASDSEEA GNVELRTDEG  240
GDDDPDSKRR NISASSQRTV AEPRIIVQTT SEVDLLDDGY RWRKYGQKVV KGNPHPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-18991581474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790093.10.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9ZQ703e-87WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2H3XX580.0A0A2H3XX58_PHODC; probable WRKY transcription factor 4 isoform X1
STRINGXP_008790093.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.13e-78WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]