PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s806851g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WOX
Protein Properties Length: 248aa    MW: 26868.8 Da    PI: 9.3113
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s806851g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-20103162357
                        --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        +R+++t+eq+++Le+l++   r+p+a+++e+++ +l    +++ ++V++WFqN++a+e++
  PDK_30s806851g001 103 TRWNPTPEQIRVLEALYRGgMRTPNAHQIERITGELskhgRIEGKNVFYWFQNHKARERQ 162
                        7*****************99**************************************97 PP
2Wus_type_Homeobox117.85e-38103164465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        tRW+PtpeQi++Le+ly+ G+rtPn+++i+rit eL+++G+ie+kNVfyWFQN+kaRerqkq
  PDK_30s806851g001 103 TRWNPTPEQIRVLEALYRGGMRTPNAHQIERITGELSKHGRIEGKNVFYWFQNHKARERQKQ 164
                        8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1398168IPR009057Homeodomain-like
PROSITE profilePS5007110.07498163IPR001356Homeobox domain
SMARTSM003892.2E-7100167IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-7102167IPR009057Homeodomain-like
CDDcd000863.11E-4103164No hitNo description
PfamPF000464.6E-18103162IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MKDQQLAVGG IWEQQLQDPS SPSSSSSSSS SSSTTITSSL TISFKRLRPL APKLTATANA  60
ATTSSSATQT NTCLDLKGFH TPTAKCTAQN PDSAQVEMQP GGTRWNPTPE QIRVLEALYR  120
GGMRTPNAHQ IERITGELSK HGRIEGKNVF YWFQNHKARE RQKQKRSALL ALSSSNNDSS  180
ASPPIMTLVS TSSRGGGGGE EADQECYDGS CKRKCRSWGR LGLDVVEEGG GDRTLELFPL  240
HPEGKQTR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778641.21e-113WUSCHEL-related homeobox 4, partial
SwissprotQ6X7J93e-55WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A2H3X5K91e-111A0A2H3X5K9_PHODC; WUSCHEL-related homeobox 4
STRINGXP_008778641.11e-110(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.18e-46WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]